DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and NR2E1

DIOPT Version :10

Sequence 1:NP_476781.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_001273031.1 Gene:NR2E1 / 7101 HGNCID:7973 Length:422 Species:Homo sapiens


Alignment Length:435 Identity:116/435 - (26%)
Similarity:186/435 - (42%) Gaps:109/435 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENR--NCIIDKRQRNRCQYCRYQKCLT 166
            |.:||||:||||||||:|:||.|||||::|::.||.|:...  .|.:||..||:|:.||.:|||.
Human    53 CKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLE 117

  Fly   167 CGMKREAVQEERQRGARNAA----------GRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMG 221
            ..|.::|||.|  ||.|.:.          |....:|..:..|.:...:.:              
Human   118 VNMNKDAVQHE--RGPRTSTIRKQVALYFRGHKEENGAAAHFPSAALPAPA-------------- 166

  Fly   222 SGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGP-------YSTVQPD------ 273
                   |.|                  |.||.....|....|..       .|..||.      
Human   167 -------FFT------------------AVTQLEPHGLELAAVSTTPERQTLVSLAQPTPKYPHE 206

  Fly   274 --------YKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVA-WC 329
                    |:.|..::|:...:.||..:::|:.:|.|:.:.|.||::||:.||.||.:..:| |.
Human   207 VNGTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWA 271

  Fly   330 SIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELS 394
            ..|   |........|:..|.:..::          ||:..     |.|:|         |.|:.
Human   272 IPV---DANTLLAVSGMNGDNTDSQK----------LNKII-----SEIQA---------LQEVV 309

  Fly   395 VKMKRLNLDRRELSCLKAIILY-------NPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDD 452
            .:.::|.||..|.:|||.|:.:       ..::|..::.|.|...:::....|:.:....:|...
Human   310 ARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQP 374

  Fly   453 GRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEA 497
            .||.:|||.||||||||....:.:|..:...:.|:..|..:..::
Human   375 CRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYKS 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_476781.1 NR_DBD_RXR 102..178 CDD:143514 40/75 (53%)
NR_LBD_RXR_like 237..480 CDD:132741 65/271 (24%)
NR2E1NP_001273031.1 NR_DBD_TLX 45..136 CDD:143537 44/84 (52%)
NR_LBD_Tlx_PNR_like 191..406 CDD:132748 60/241 (25%)

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