Protein Alignment usp and tll

DIOPT Version :10

• Sequence 1: NP_476781.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_524596.1
• Gene: tll / 43656
• FlyBaseID: FBgn0003720
• Length: 452
• Species: Drosophila melanogaster
• Alignment Length: 512
• Identity: 115/512 - (22%)
• Similarity: 192/512 - (37%)
• Gaps: 161/512 - (31%)

  Fly    72 MAQAPNSAGGSAAAAVQQQYPPNHPLSGSKHL-CSICGDRASGKHYGVYSCEGCKGFFKRTVRKD 135
            |.|..||...|.||:.:..|          |: |.:|.|.:||||||:|:|:||.|||||::|:.
  Fly    11 MDQKYNSVRLSPAASSRILY----------HVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRS 65

  Fly   136 LTYACRENRN--CIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNA------------- 185
            ..|.|:..:.  |::||..||:|:.||.:||...||.::|||.|  ||.||:
  Fly    66 RQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQHE--RGPRNSTLRRHMAMYKDAM 128

  Fly   186 --AGRL-----------SASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRD 237
              ||.:           :|..|....|..:.|...:.|.....::......:.       :...|
  Fly   129 MGAGEMPQIPAEILMNTAALTGFPGVPMPMPGLPQRAGHHPAHMAAFQPPPSA-------AAVLD 186

  Fly   238 FSIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVN---------------- 286
            .|:.|:                      |:..|...:.|..|.....:|
  Fly   187 LSVPRV----------------------PHHPVHQGHHGFFSPTAAYMNALATRALPPTPPLMAA 229

  Fly   287 --------KQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGG 343
                    :.||:.|.:.:.:..|.::|:.||::||:.:|.|..|..:|
  Fly   230 EHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMA---------------- 278

  Fly   344 GGLGHDGSFERRSPGLQPQQLFLNQSFSYHRN--SAIKAGVSAIFDRILSELSVKMKRLNLDRRE 406
                     :...|....|.||:.:|.:.:|.  ..:...|.| |..:|::|.    .||:|..|
  Fly   279 ---------QYLMPMNFAQLLFVYESENANREIMGMVTREVHA-FQEVLNQLC----HLNIDSTE 329

  Fly   407 LSCLKAIILY-----------------------------NPDIRGIKSRAEIEMCREKVYACLDE 442
            ..||:||.|:                             :.:.||:....::........:.|..
  Fly   330 YECLRAISLFRKSPPSASSTEDLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHN 394

  Fly   443 HCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFR-----ITSDRPLEELFLEQ 494
            :.:..||....||..||..:..:..:|....:.|| ||     ||..|.:.:::.::
  Fly   395 YIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEELF-FRKTIGDITIVRLISDMYSQR 450

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_476781.1	NR_DBD_RXR	102..178	CDD:143514	37/78 (47%)
		NR_LBD_RXR_like	237..480	CDD:132741	53/297 (18%)
tll	NP_524596.1	NR_DBD_TLX	25..117	CDD:143537	43/103 (42%)
		NR_LBD	215..436	CDD:472173	47/251 (19%)