DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment usp and nhr-136

DIOPT Version :10

Sequence 1:NP_476781.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_506039.2 Gene:nhr-136 / 182566 WormBaseID:WBGene00003726 Length:435 Species:Caenorhabditis elegans


Alignment Length:178 Identity:33/178 - (18%)
Similarity:65/178 - (36%) Gaps:37/178 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   527 GYVLTSTQKAQISLARCLYEDADIYALDKAFGPMDRTTSNKIFTRVLGENG-------------- 577
            |.|||:..|.::.....|:| ..:.|:....||...|.  |...||:|..|              
 Worm    15 GLVLTTDPKPRLRWTTELHE-RFVDAVTHLGGPEKATP--KTIMRVMGVKGLTLYHLKSHLQKFR 76

  Fly   578 --------YLRDKTVILATNNIELIKTFTMVHVLKNGKIETSGSYDQILECSEIMSDLLNQSRID 634
                    :.::.::.:...|     ..:|:.:.:|....||.     |.....|:::  |..:.
 Worm    77 LGKQPHKEHSQNHSICIRDTN-----RASMLDLRRNAVFTTSP-----LIIGRNMNEM--QMEVQ 129

  Fly   635 KIIEEKYSDEKPPRKTVMFDDKVLKKRKKKQSMEDTAPVFENRSVYPF 682
            :.|||:...|:...:.:....|.::...:|......|.:.::.|...|
 Worm   130 RRIEEEVVIERQVNQRIAAQGKYMESMLEKACETQEASLTKDYSTLFF 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_476781.1 NR_DBD_RXR 102..178 CDD:143514
NR_LBD_RXR_like 237..480 CDD:132741
nhr-136NP_506039.2 NR_DBD_HNF4A 53..128 CDD:143518 12/86 (14%)
HOLI 243..400 CDD:214658
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.