DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and nhr-153

DIOPT Version :10

Sequence 1:NP_476781.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_001355367.1 Gene:nhr-153 / 182564 WormBaseID:WBGene00007546 Length:442 Species:Caenorhabditis elegans


Alignment Length:435 Identity:99/435 - (22%)
Similarity:159/435 - (36%) Gaps:115/435 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 PLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNC-----IIDKRQRNR 155
            |.:....:|.||.:.|.|.||.|.||.|||.||:||:.....:.|.:..||     :||..:| .
 Worm    48 PQNQCPSVCQICRNPAIGYHYEVPSCNGCKTFFRRTIITGRKFKCFKVSNCLDGNDVIDTSKR-V 111

  Fly   156 CQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSA---SGGGSSGPGSVGGSSSQGGGGGGGVS 217
            |:.||::||:..||...|:|.|.:........:|.|   ..|.....|:|               
 Worm   112 CRACRFEKCVQAGMNPMAIQAEAKTDEGEELKKLIAKKFENGEKLNDGTV--------------- 161

  Fly   218 GGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALT--FLRVGPYSTVQPDYKGAVSA 280
                       |.......:..:.::|:.|.:.| :..|..:.  ||.       |.|...|:|:
 Worm   162 -----------FFNVHDRLNQILGKLIKIETKLE-KVHDNGMPMGFLD-------QRDLSTALSS 207

  Fly   281 LCQVVNKQLFQM-----------------------------VEYARMMPHFAQVPLDDQVILLKA 316
            .....|.::..|                             :||::.....:.:.:..::||||.
 Worm   208 KVIYNNMEIPSMSYTPVKISKNTGLPKRRSRNFVHSSCLASIEYSKTFDFSSAIDISSKIILLKN 272

  Fly   317 AWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSF-----ERRSPGLQPQQLFL-NQSFSYHRN 375
            ..:.......|:.:...|.....      |..|||.     .:..|.::.|:.|| |...|:..|
 Worm   273 TALSCANLTNAYTTFRKLKSDTL------LYPDGSIYGPPRRKNGPLIEKQRSFLQNTLISFMTN 331

  Fly   376 SAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREK-VYA- 438
                                     |:|:.|...||||:|.||.|..:.......:.||: ||| 
 Worm   332 -------------------------NVDKTEYILLKAIVLCNPAIIDLPYADSKHIQREREVYAQ 371

  Fly   439 CLDEHCRLEHPGDDG--RFAQLLLRLPALRSISLKCQDHLFLFRI 481
            ||..:|.|:|....|  ||:.||.....|.:...:.:|:....::
 Worm   372 CLFRYCLLQHGTLHGPARFSALLSIFNVLENQQKEQKDYYLYIKL 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_476781.1 NR_DBD_RXR 102..178 CDD:143514 32/80 (40%)
NR_LBD_RXR_like 237..480 CDD:132741 59/283 (21%)
nhr-153NP_001355367.1 NR_DBD_HNF4A 56..133 CDD:143518 32/77 (42%)
HOLI 242..403 CDD:214658 46/191 (24%)

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