DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment usp and nhr-149

DIOPT Version :10

Sequence 1:NP_476781.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_504874.2 Gene:nhr-149 / 182174 WormBaseID:WBGene00015397 Length:375 Species:Caenorhabditis elegans


Alignment Length:412 Identity:88/412 - (21%)
Similarity:144/412 - (34%) Gaps:137/412 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRN----RCQYCRYQ 162
            ||||||...|.|.||.|.||:|||.||:|.....:...|..|..|....|:.|    :|:.||:|
 Worm     5 HLCSICSRPAQGYHYDVISCKGCKTFFRRMWLSKIKEMCPLNNKCFDFNRRINMSLSKCRACRFQ 69

  Fly   163 KCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSD 227
            :||..||...|:|.:                                             ||...
 Worm    70 RCLNVGMNPAAIQCD---------------------------------------------GNPKK 89

  Fly   228 DFMTNSVSRDF-----SIERIIEAEQRAETQC-----------------------GDRALTFLRV 264
            |   :|..|||     .|:.||:.....|.:.                       |..:|:...:
 Worm    90 D---SSHFRDFDSIDEKIKNIIDTLTYVELKLENYRKSAYNPVLSLSTGLDDLIEGSCSLSLAEI 151

  Fly   265 -GPYSTVQ---PDYKGAVSAL--------CQVVNKQ------LFQMVEYARMMPHFAQVPLDDQV 311
             ||.|...   .:::...|::        |.|.|::      :...:||.:....|.::...|:.
 Worm   152 YGPMSGWPLGFEEHQLPSSSMRNVSCEEPCPVSNRKYWTHCNMLTTIEYFKTFKFFHELSSRDKF 216

  Fly   312 ILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNS 376
            :|.:...:.....:::..::....|       ..|..|||       :||:|        ..|:.
 Worm   217 VLARHTLLLCQNLHISHYTVSHNFD-------SCLQPDGS-------MQPKQ--------DERHY 259

  Fly   377 AIKAGVSAIFDRILSELSVK-MKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACL 440
            .|            :.:|:: :.|..:...|...||||...||.:..:...|:..:.:|: |...
 Worm   260 PI------------AMMSIEPLVRCKIQHVEYVLLKAICFCNPAVPELSQNAQRILAKER-YCFA 311

  Fly   441 D---EHCRLEHPGDDGRFAQLL 459
            |   .||...:....|.||:|:
 Worm   312 DILINHCLRNYTDGPGHFAELI 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_476781.1 NR_DBD_RXR 102..178 CDD:143514 34/79 (43%)
NR_LBD_RXR_like 237..480 CDD:132741 49/273 (18%)
nhr-149NP_504874.2 ZnF_C4 6..78 CDD:197701 31/71 (44%)
HOLI 190..342 CDD:214658 34/179 (19%)

Return to query results.
Submit another query.