Protein Alignment usp and nhr-147

DIOPT Version :10

• Sequence 1: NP_476781.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_504873.2
• Gene: nhr-147 / 182170
• WormBaseID: WBGene00015395
• Length: 373
• Species: Caenorhabditis elegans
• Alignment Length: 395
• Identity: 82/395 - (20%)
• Similarity: 139/395 - (35%)
• Gaps: 116/395 - (29%)

  Fly   104 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRN----RCQYCRYQKC 164
            ||:||..|.|.||.|.||:|||.||:|.........|..|.:| .|.:.:|    ||:.|||:||
 Worm    14 CSVCGRSAKGYHYDVISCKGCKTFFRRMYLLKSKIICGLNNSC-FDLKNKNEPYLRCRACRYKKC 77

  Fly   165 LTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDF 229
            :..||.|..:|....:...|...:|:.....|                             :||.
 Worm    78 IDVGMNRNGIQSSESKKEFNKTQKLNFQVMES-----------------------------ADDV 113

  Fly   230 MTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQV---------- 284
            | ||:     |||:...|.:.|.   .|..:|   .|..:.....|..:...||:
 Worm   114 M-NSI-----IERLSYVESKLEI---FRTSSF---NPQWSSFSSLKYLLEGTCQLSSTEKSENGL 166

  Fly   285 ----------------VNKQ------LFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVA 327
                            .||:      |..:.||.:....|.::..:|:::|.:..        :.
 Worm   167 EKIYIIDFPTGNQYTKTNKKIWTLCNLLTITEYIKTFECFHKISSNDRLVLTRHI--------IL 223

  Fly   328 WCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRN-SAIKAGVSAIFDRILS 391
            .|.|:               |:..:.            :::.|..:.| ...:...:.:...:|:
 Worm   224 MCKIL---------------HESHYA------------VSRKFDNYLNPDGTQESKTEMHHSLLA 261

  Fly   392 ELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVY--ACLDEHCRLEHPGDDGR 454
            .....:.|.::...|...|||:...||.:.|:...|:..:.:|:..  ..|.:.||.......|.
 Worm   262 MSISPLVRTHIQPVEYVLLKAMCFCNPAVTGLSQHAQTTLAKERQQFGNLLFDLCRKNRRDGPGH 326

  Fly   455 FAQLL 459
            |.:|:
 Worm   327 FVELV 331

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_476781.1	NR_DBD_RXR	102..178	CDD:143514	33/77 (43%)
		NR_LBD_RXR_like	237..480	CDD:132741	41/258 (16%)
nhr-147	NP_504873.2	ZnF_C4	13..85	CDD:197701	31/71 (44%)
		HOLI	192..340	CDD:214658	28/175 (16%)