DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and nhr-67

DIOPT Version :10

Sequence 1:NP_476781.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_502094.1 Gene:nhr-67 / 178024 WormBaseID:WBGene00003657 Length:416 Species:Caenorhabditis elegans


Alignment Length:435 Identity:104/435 - (23%)
Similarity:165/435 - (37%) Gaps:140/435 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 AVQQQYPPNHPLSGSKHL----CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRN- 145
            ||.|...|:     |:.|    |.:|.|.:|||||.::||:||.|||||::|:...|.|:...: 
 Worm     4 AVSQMSVPS-----SRILLDVDCRVCEDHSSGKHYSIFSCDGCAGFFKRSIRRHRQYVCKNKGSP 63

  Fly   146 ----CIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGR----LSASGGGSSGPGSV 202
                |.:||..||:|:.||.:|||..||.::|||.|  ||.||::.|    :...|...:.|   
 Worm    64 SEGQCKVDKTHRNQCRACRLRKCLEIGMNKDAVQHE--RGPRNSSLRRQQMMFDHGSSPNSP--- 123

  Fly   203 GGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPY 267
                            .|||.:.:....|:|::||              |..|..|..|.     
 Worm   124 ----------------EMGSESDAIILPTSSMNRD--------------TVAGTAARIFF----- 153

  Fly   268 STVQPDYKGAVSALCQ-VVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSI 331
                     |:...|| .:|                 .||.:.|:.:.:..|..||:.:......
 Worm   154 ---------ALVGFCQNPLN-----------------GVPKERQMTMFQQNWAALLVLHATETRA 192

  Fly   332 VSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVK 396
            ::                      |..::.:.:   ...|..||:...|     |:.|       
 Worm   193 IT----------------------SKQIRTETI---SGSSEQRNAVANA-----FEII------- 220

  Fly   397 MKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLR 461
             :||.||.||...||...::    |...|..:|......:.       ...|..:..|:.|.:..
 Worm   221 -ERLQLDNREYMMLKHFTMW----RDTPSAIQIVFQLASIQ-------NFTHRTEPTRYIQCINA 273

  Fly   462 LPALRSISLKCQDHLFLFRITS---DRPLEELFLEQLEAPPPPGL 503
            :.|:.:.|:  .|.||...|.|   .|.::::| :..:.|.|..|
 Worm   274 IAAIPTTSI--IDVLFRPSIGSASMPRLIQDMF-KPPQQPTPTSL 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_476781.1 NR_DBD_RXR 102..178 CDD:143514 37/84 (44%)
NR_LBD_RXR_like 237..480 CDD:132741 41/243 (17%)
nhr-67NP_502094.1 NR_DBD_like 13..107 CDD:413390 43/95 (45%)

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