DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and Hnf4

DIOPT Version :10

Sequence 1:NP_476781.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:XP_061502391.1 Gene:Hnf4 / 1269402 VectorBaseID:AGAMI1_000595 Length:620 Species:Anopheles gambiae


Alignment Length:483 Identity:134/483 - (27%)
Similarity:219/483 - (45%) Gaps:121/483 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 DISQLNDSNNSSF-SPKAESPVPFMQAMSMVHVLPGSNSASSNNNSAGDAQMAQAPNSAGGSAAA 85
            :.|:|||....|. ||...|...:...:|.:.                       ||.:|..:|.
Mosquito    31 EYSELNDRTKGSHDSPSHTSDTAYESCLSPLQ-----------------------PNDSGSFSAI 72

  Fly    86 AVQQQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 150
                            ::|:||.|||:|||||..||:||||||:|:|||:.||:||.:|||::||
Mosquito    73 ----------------NVCAICCDRATGKHYGAASCDGCKGFFRRSVRKNHTYSCRFSRNCVVDK 121

  Fly   151 RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGG 215
            .:||:|:|||.:||...|||:||||.||.        |:|.....:....::.|.|.:       
Mosquito   122 DKRNQCRYCRLKKCFKAGMKKEAVQNERD--------RISCRKPSTDDKNTINGLSVK------- 171

  Fly   216 VSGGMGSGNGSDDFM--TNSVSRDF--SIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKG 276
                         |:  ..:.||.|  :::...:||:                   :.:......
Mosquito   172 -------------FLLRAENFSRHFGAALDETNDAEE-------------------ADLSSKRFA 204

  Fly   277 AVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGG 341
            :::.:|..:.:||..:||:|:.:|.||::.|||||.||:|...|.|:..::              
Mosquito   205 SINDVCDSMKQQLLILVEWAKSIPAFAELQLDDQVALLRAHAGEHLLLGLS-------------- 255

  Fly   342 GGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHR----NSAIKAGVSAIFDRILSELSVKMKRLNL 402
                        |||..||...|..|......:    |.:....:|.|..||:.||...||.:.:
Mosquito   256 ------------RRSMHLQDMLLLGNNCIITKQCPDANMSPNLDISRIGARIIDELVSAMKEIQI 308

  Fly   403 DRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRS 467
            |..||:|:||::.::|..:|:...|:|:..|.:|...|:::...:.....|||.::||.||.|:|
Mosquito   309 DDSELACIKALVFFDPSAKGLNEPAKIKSLRHQVLNNLEDYISDKLYDSRGRFGEILLLLPVLQS 373

  Fly   468 ISLKCQDHLFLFRITSDRPLEELFLEQL 495
            |:.:....:.|.::.....::.|..|.|
Mosquito   374 ITWQMIQQIELAKMFGVAHIDSLLQEML 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_476781.1 NR_DBD_RXR 102..178 CDD:143514 47/75 (63%)
NR_LBD_RXR_like 237..480 CDD:132741 62/248 (25%)
Hnf4XP_061502391.1 None

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