Protein Alignment Rbcn-3B and RAD28

DIOPT Version :9

• Sequence 1: NP_001284797.1
• Gene: Rbcn-3B / 31155
• FlyBaseID: FBgn0023510
• Length: 1525
• Species: Drosophila melanogaster
• Sequence 2: NP_010313.3
• Gene: RAD28 / 851594
• SGDID: S000002437
• Length: 506
• Species: Saccharomyces cerevisiae
• Alignment Length: 195
• Identity: 38/195 - (19%)
• Similarity: 66/195 - (33%)
• Gaps: 74/195 - (37%)

  Fly  1358 KMQSEIAGLLVEVMDIALHCVDGNELKNRGLAELCPAICKFNQISHCAQTRRIAVGANSGNLAIY 1422
            :|||||                           ||   ||||.:    :.:.||.|...|.:.::
Yeast   285 RMQSEI---------------------------LC---CKFNPV----REQIIACGDMEGGVKLW 315

  Fly  1423 ELR------------QNKCQMI------------------PAHTHPITSLAFSPDGKYLVSYSCA 1457
            :||            :|:.:.|                  .||....:.:.::.:|..|.|.. .
Yeast   316 DLRMRNRLYSELKRNKNRFKTINNDDNDDQSDVYFSSNQSKAHLRCCSDIVWNSEGSELCSVG-M 379

  Fly  1458 ENRLSFWQTSTGMFGLGQSQTRCTKGYSTAPIPDVSRLNPMRLA--KLVWINNRTVTLMLADGSE 1520
            :.:|:.|:..|.:.     |......||.....|:||:...:..  :|:|.:.  ..|.:.|..|
Yeast   380 DGKLNVWRPFTEIL-----QPEGLASYSQLGTQDLSRIKYKKRVSRRLLWFDK--FLLCITDNGE 437

  Fly  1521  1520
            Yeast   438  437

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbcn-3B	NP_001284797.1	WD40	<11..>204	CDD:225201
		WD40 repeat	20..63	CDD:293791
		WD40	<22..202	CDD:295369
		WD40 repeat	68..107	CDD:293791
		WD40 repeat	118..152	CDD:293791
		WD40 repeat	160..204	CDD:293791
		WD40 repeat	212..251	CDD:293791
		WD40 repeat	406..459	CDD:293791
		WD40	<449..>607	CDD:225201
		WD40	453..>597	CDD:295369
		WD40 repeat	513..555	CDD:293791
		WD40 repeat	560..596	CDD:293791
		WD40	<1395..>1469	CDD:225201	19/103 (18%)
		WD40	<1399..1495	CDD:295369	22/125 (18%)
		WD40 repeat	1439..1466	CDD:293791	5/26 (19%)
RAD28	NP_010313.3	WD40	1..386	CDD:225201	25/135 (19%)
		WD40 repeat	61..102	CDD:293791
		WD40 repeat	108..170	CDD:293791
		WD40 repeat	198..233	CDD:293791
		WD40 repeat	241..279	CDD:293791
		WD40 repeat	290..351	CDD:293791	15/94 (16%)
		WD40 repeat	362..388	CDD:293791	5/26 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG4155
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900