Protein Alignment Rbcn-3B and RAD28

DIOPT Version :10

• Sequence 1: NP_569960.2
• Gene: Rbcn-3B / 31155
• FlyBaseID: FBgn0023510
• Length: 1525
• Species: Drosophila melanogaster
• Sequence 2: NP_010313.3
• Gene: RAD28 / 851594
• SGDID: S000002437
• Length: 506
• Species: Saccharomyces cerevisiae
• Alignment Length: 195
• Identity: 38/195 - (19%)
• Similarity: 66/195 - (33%)
• Gaps: 74/195 - (37%)

  Fly  1358 KMQSEIAGLLVEVMDIALHCVDGNELKNRGLAELCPAICKFNQISHCAQTRRIAVGANSGNLAIY 1422
            :|||||                           ||   ||||.:    :.:.||.|...|.:.::
Yeast   285 RMQSEI---------------------------LC---CKFNPV----REQIIACGDMEGGVKLW 315

  Fly  1423 ELR------------QNKCQMI------------------PAHTHPITSLAFSPDGKYLVSYSCA 1457
            :||            :|:.:.|                  .||....:.:.::.:|..|.|.. .
Yeast   316 DLRMRNRLYSELKRNKNRFKTINNDDNDDQSDVYFSSNQSKAHLRCCSDIVWNSEGSELCSVG-M 379

  Fly  1458 ENRLSFWQTSTGMFGLGQSQTRCTKGYSTAPIPDVSRLNPMRLA--KLVWINNRTVTLMLADGSE 1520
            :.:|:.|:..|.:.     |......||.....|:||:...:..  :|:|.:.  ..|.:.|..|
Yeast   380 DGKLNVWRPFTEIL-----QPEGLASYSQLGTQDLSRIKYKKRVSRRLLWFDK--FLLCITDNGE 437

  Fly  1521  1520
            Yeast   438  437

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbcn-3B	NP_569960.2	WD40 repeat	20..63	CDD:293791
		WD40	<22..202	CDD:475233
		WD40 repeat	68..107	CDD:293791
		WD40 repeat	118..152	CDD:293791
		WD40 repeat	160..204	CDD:293791
		WD40 repeat	212..251	CDD:293791
		WD40 repeat	406..459	CDD:293791
		WD40	453..>597	CDD:475233
		WD40 repeat	513..555	CDD:293791
		WD40 repeat	560..596	CDD:293791
		GvpP	<735..816	CDD:444004
		WD40	<1408..>1469	CDD:441893	15/90 (17%)
		WD40 repeat	1439..1466	CDD:293791	5/26 (19%)
RAD28	NP_010313.3	WD40 repeat	61..102	CDD:293791
		WD40 repeat	108..170	CDD:293791
		WD40	<190..387	CDD:475233	25/136 (18%)
		WD40 repeat	198..233	CDD:293791
		WD40 repeat	241..279	CDD:293791
		WD40 repeat	290..351	CDD:293791	15/94 (16%)
		WD40 repeat	362..388	CDD:293791	5/26 (19%)