DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbcn-3B and wdr32

DIOPT Version :10

Sequence 1:NP_569960.2 Gene:Rbcn-3B / 31155 FlyBaseID:FBgn0023510 Length:1525 Species:Drosophila melanogaster
Sequence 2:NP_998111.2 Gene:wdr32 / 405882 ZFINID:ZDB-GENE-040426-2314 Length:508 Species:Danio rerio


Alignment Length:372 Identity:76/372 - (20%)
Similarity:129/372 - (34%) Gaps:122/372 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VVLWGPTAPTH----------CISSVFLSDDQFTLVTGCYDG-QICLWQVEPTTLKMSPRCLLVG 63
            |:|:.|.:..|          |::::...|::  |...|.|. .|.||.:.....|:   |.|.|
Zfish   152 VLLFDPVSSRHIKTLVEAHEDCVNNIRFLDNR--LFATCSDDTTIALWDLRKLNSKV---CSLHG 211

  Fly    64 HSAPVLCLVRASLLPENNFLVSSSENGEMCTWD---LTDGKCMEAVKLPQVHTQIQSYHTANSED 125
            |::.|..:...:   ....||:|..:|.:.|||   .|:..|        .|.:.  :||.....
Zfish   212 HASWVKNIEYDT---HTRLLVTSGFDGNVITWDTNRFTEDGC--------PHKKF--FHTRYLMR 263

  Fly   126 VRLF--C--------IGYYAEIMVMD-PFSLEVIYVLSSKVKPDWISAIHVLRPMRRKDDVVLAI 179
            :||.  |        .||...:..:| ..||||             .:..:||..|.      .:
Zfish   264 MRLTPDCSKMLISTSSGYLLILHDLDLTQSLEV-------------GSYRILRARRP------PL 309

  Fly   180 TTTGTV-------KVWTLTGNENKHAEPIYENESKEI------------RCLNAI--------TM 217
            :|.|:.       ...|:....:.|.|.:....|.|:            .|:.::        |:
Zfish   310 STEGSSAGSRSGGPRHTIDNKNHPHREGLSPRNSLEVLTPEIPGERDRGNCITSLQLHPKGWATL 374

  Fly   218 NCCAQNQRTVLLVCTKYWQIYDAGDFTVLCSVIAPARERWQGGDFITSDRVMLWTDE---GKGYL 279
            ..|:.|.......|     :|:..:.......::|.          .|.|:..:.:|   |:||:
Zfish   375 LRCSSNMDDQEWTC-----VYEFQEGAPPRPPVSPR----------CSLRLTHYIEEANVGRGYI 424

  Fly   280 YKLPANCI-PDNKEFHSKSVVRDAPYLYYVLQHAGD----KVLSCPP 321
            .:|   |. ||.:...|       ||.|.|...|.|    :::.|.|
Zfish   425 KEL---CFSPDGRLICS-------PYGYGVRLLAFDENCAELVDCMP 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbcn-3BNP_569960.2 WD40 repeat 20..63 CDD:293791 12/53 (23%)
WD40 <22..202 CDD:475233 43/201 (21%)
WD40 repeat 68..107 CDD:293791 10/41 (24%)
WD40 repeat 118..152 CDD:293791 12/44 (27%)
WD40 repeat 160..204 CDD:293791 8/50 (16%)
WD40 repeat 212..251 CDD:293791 5/46 (11%)
WD40 repeat 406..459 CDD:293791
WD40 453..>597 CDD:475233
WD40 repeat 513..555 CDD:293791
WD40 repeat 560..596 CDD:293791
GvpP <735..816 CDD:444004
WD40 <1408..>1469 CDD:441893
WD40 repeat 1439..1466 CDD:293791
wdr32NP_998111.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..75
WD 1 126..165 4/12 (33%)
WD40 <128..>294 CDD:441893 36/159 (23%)
WD40 repeat 132..167 CDD:293791 4/14 (29%)
WD 2 169..207 9/42 (21%)
WD40 repeat 174..210 CDD:293791 9/40 (23%)
WD 3 211..250 11/41 (27%)
WD40 repeat 216..242 CDD:293791 7/28 (25%)
WD 4 256..295 9/38 (24%)
WD40 repeat 261..288 CDD:293791 5/26 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 307..343 5/41 (12%)
WD 5 356..396 6/44 (14%)
WD 6 419..457 14/47 (30%)
WD 7 475..508
Blue background indicates that the domain is not in the aligned region.

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