DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbcn-3B and CG30116

DIOPT Version :10

Sequence 1:NP_569960.2 Gene:Rbcn-3B / 31155 FlyBaseID:FBgn0023510 Length:1525 Species:Drosophila melanogaster
Sequence 2:NP_725799.1 Gene:CG30116 / 37126 FlyBaseID:FBgn0028496 Length:1922 Species:Drosophila melanogaster


Alignment Length:1193 Identity:214/1193 - (17%)
Similarity:390/1193 - (32%) Gaps:439/1193 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LVVPVVLWGPTAP------------THCISSVFLSDDQFTLVTGCYDGQICLWQVEPTTLKMSPR 58
            |:||:..|.| ||            |.||.:|:|:..:..|:.....|.:..|.:...:|..   
  Fly   873 LLVPLTGWLP-APLPSQIRTMTVSGTGCIRAVWLAPSKQHLILATSSGDVQQWHIMSNSLDH--- 933

  Fly    59 CLLVGHSAPVLCLVRASLLPENN--FLVSSSENGEMCTWDLTDGKCMEAVKLPQVHTQIQSYHTA 121
             :..||:|.|.||:.|   |:::  .|::.||:..:..|.         |.|.:....|::.|||
  Fly   934 -IFKGHTAAVTCLLVA---PQSDSELLLTGSEDATVLVWH---------VGLRERRAHIKNAHTA 985

  Fly   122 ----------------NSEDVRLFCIGYYAEIMVMDPFSLEVIYVLSSKVKPDWISAIHVLRPMR 170
                            :|||         |.|.:.|..|.::.:.::....|  :|.|.|.... 
  Fly   986 PITGVAAGANNTLIISSSED---------ASIAITDLASGKLRHRITHHRGP--VSGIVVAGAC- 1038

  Fly   171 RKDDVVLAITTTGTVKVWTLTGNENKHAEPIYENESKEIRCLNAITMNCC------AQNQRTVLL 229
               ||:::.....|:.||.|                .....||.:.|...      :.|...:|.
  Fly  1039 ---DVLISGGLDRTICVWDL----------------DNFTLLNTMQMTSAVLRIDISWNSVFLLA 1084

  Fly   230 VCTKYWQIYDAGDFTVLCSVIAPARERWQ-------------GGDFITSDRVMLWTDEGKGYLYK 281
            :|.         |..:....:|..:|...             |.|   |.|.::..|:.:..:|.
  Fly  1085 LCE---------DNALYVRTLATGKELHTLKGHKSKIRSISIGKD---SQRCVVGCDDTRALIYD 1137

  Fly   282 LPANCIPDNKEFHSKSVVRDAPYLYYVLQHAGDKVLSCPPAMKLLQGAGGQHN-----LLRGDSE 341
            :                            |||..|.|.||....:.......|     .:.|:..
  Fly  1138 M----------------------------HAGKLVRSLPPNPGPVTAVHAMDNDDFLVTVGGNKI 1174

  Fly   342 GYISVWNVPEVPLDNISILQAKQMP--PRPLKPHVCTSLVEAWSIMDPPPVGILDQLSRITESPV 404
            .:.|..|      :.:.:....:.|  .|.||.|.......:.::   ||:...| |||.:    
  Fly  1175 TFYSFRN------EELYVNPYSRHPRRKRSLKRHAQAQRSPSTTL---PPITCFD-LSRDS---- 1225

  Fly   405 KLTSSIYLPQQSRLVIGREDGSIVIVPATQTVMMQLLVGIKQNFSDWPSHQ-ILYGHRGRVNCL- 467
                     ||..:..||           ...:|::         :.|.:| .|.||...|:|| 
  Fly  1226 ---------QQMAIASGR-----------HVHLMRI---------NTPEYQCTLEGHTAGVSCLK 1261

  Fly   468 LCPSMIHSRYEKSHLLSGGIDFAVCLWDLYSGSLLHRFCVHAGEITQLLVPPESCSPRILKCICS 532
            ..|:       ...|.:|..|..|.:|:|..|.:.:.|..|...:.:::|        ::..:..
  Fly  1262 FAPN-------GEFLATGSEDRLVHIWNLALGEICNSFKGHTAPVVKVVV--------LMDSLRV 1311

  Fly   533 VASDH-SVTLVSLQERKCVTLASRHLFPVVTIKWRPLD-----DFLIVGCSDGSVYVWQM----- 586
            :::|. |:.||.:..       |.:|...:...::.|.     .|.:....|.::.:|.:     
  Fly  1312 ISTDRDSMLLVWMAH-------SGNLLQTIQGPYKSLSVTNNMRFAVSTNGDNTLKIWSLTQEDE 1369

  Fly   587 --ETGHLDRVLHGMLAEEVLSACDEQAEDGGSGGGGGSNGASASEMGMANPAVHFFRGLKSRNMN 649
              ...|.|.:           .|.|.:.|                      :||...|  ||:|:
  Fly  1370 KYSVSHSDEI-----------TCFEISAD----------------------SVHIISG--SRDMS 1399

  Fly   650 -AIRHATQRGITQLQQLQGHNQGNFDFLMKHRSNPLVIQGLRTNPKDAESHILFFDIEGLIFELH 713
             .:..||...::|:  |.||:.......:...:...|:.|.:      :.:::.:|:        
  Fly  1400 LKVWQATGGKLSQV--LVGHSDAVTCVAVSVTNKTQVLSGSK------DMNLILWDL-------- 1448

  Fly   714 SEEYAQMTPATLESLGVHLQNPKDGKSMHLDASKKIGDFFNKVKNKAVDVEKILKDKDKHGLVQK 778
                  :|...:.:|..|| .|..|..:..|.|.                           .|..
  Fly  1449 ------LTGEEVHTLAGHL-GPVIGVKVSADGST---------------------------AVSG 1479

  Fly   779 FKEKTEIV-EKKVQAKVESLQKAVEPHEEQQDLKSKIASKMEVTHV---MEVAQLLLSLLHSWGL 839
            ..:||.|| |.|....:.|||..|                 ..||.   :||:::|:.|:.|:.|
  Fly  1480 SDDKTLIVWETKRGLALTSLQMHV-----------------PFTHFDISLEVSRVLVQLVDSYNL 1527

  Fly   840 DPHLDKMCETRLGLLRPIV-----PISYGVLSKAGYMSLLLPTWQN-----NYAIPPGIQLPSSS 894
                            |::     |..|          :.|||:..     ....|.|   |...
  Fly  1528 ----------------PVICLHNTPAQY----------VKLPTYSGPSKDVEDLRPQG---PKRQ 1563

  Fly   895 KKRPLPEELQRLEHLTAVFTSRLHWELSTTLTTNHILALVAMSNT------LLSMSAASFLPDSE 953
            .||.|.:|:. |:..|        |:..    ..|:.:.|.|:..      ..|:||:.      
  Fly  1564 MKRLLKKEVS-LDTYT--------WQKK----YGHLTSSVMMAQVDERLKRRFSVSASM------ 1609

  Fly   954 KHKKLQRLAQ-RTDSTLSN--EEEREELMAHHISQIKHAWSLLA----------THHCFLLPDKI 1005
              :::.::|: :|.::.:|  .|:.....:.|..|::..|:..:          :....|:.|::
  Fly  1610 --EEISKIAETKTGASQANLGPEQAALAQSQHFDQLEALWNKRSPPRRRHNAGLSRQTSLVEDRL 1672

  Fly  1006 EALEPKKFKRPQVEMMVKRWQ--HHCIEIREAAQQILLGELTRMGKKGRKQLVESW--------- 1059
            |:.:..:::..:..|:...:.  ||               |.|:  .|.:.|.::|         
  Fly  1673 ESSDDDEYQDERAGMLSASYDNIHH---------------LARL--PGLRSLHDAWKTNSLRVPS 1720

  Fly  1060 -AQYLPLYTHTEPIVGAQQQLAL 1081
             :.....|..|.|...:|...:|
  Fly  1721 RSARTKFYVSTPPPQNSQNSSSL 1743

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbcn-3BNP_569960.2 WD40 repeat 20..63 CDD:293791 8/42 (19%)
WD40 <22..202 CDD:475233 42/197 (21%)
WD40 repeat 68..107 CDD:293791 9/40 (23%)
WD40 repeat 118..152 CDD:293791 10/49 (20%)
WD40 repeat 160..204 CDD:293791 9/43 (21%)
WD40 repeat 212..251 CDD:293791 7/44 (16%)
WD40 repeat 406..459 CDD:293791 8/53 (15%)
WD40 453..>597 CDD:475233 30/158 (19%)
WD40 repeat 513..555 CDD:293791 5/42 (12%)
WD40 repeat 560..596 CDD:293791 6/47 (13%)
GvpP <735..816 CDD:444004 15/81 (19%)
WD40 <1408..>1469 CDD:441893
WD40 repeat 1439..1466 CDD:293791
CG30116NP_725799.1 WD40 <897..1057 CDD:441893 44/206 (21%)
WD40 repeat 901..937 CDD:293791 6/39 (15%)
WD40 repeat 942..982 CDD:293791 12/51 (24%)
WD40 repeat 988..1024 CDD:293791 7/44 (16%)
WD40 991..1491 CDD:441893 122/720 (17%)
WD40 repeat 1029..1064 CDD:293791 11/54 (20%)
WD40 repeat 1071..1106 CDD:293791 6/43 (14%)
WD40 repeat 1112..1147 CDD:293791 10/65 (15%)
WD40 repeat 1216..1252 CDD:293791 12/69 (17%)
WD40 repeat 1258..1294 CDD:293791 11/42 (26%)
WD40 repeat 1299..1335 CDD:293791 7/50 (14%)
WD40 repeat 1340..1374 CDD:293791 4/33 (12%)
WD40 repeat 1379..1415 CDD:293791 12/72 (17%)
WD40 repeat 1421..1458 CDD:293791 4/56 (7%)
WD40 repeat 1464..1488 CDD:293791 7/50 (14%)
Blue background indicates that the domain is not in the aligned region.

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