DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Edem1 and F10C2.5

DIOPT Version :10

Sequence 1:NP_001259152.1 Gene:Edem1 / 31154 FlyBaseID:FBgn0023511 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_506018.1 Gene:F10C2.5 / 179653 WormBaseID:WBGene00008646 Length:781 Species:Caenorhabditis elegans


Alignment Length:728 Identity:328/728 - (45%)
Similarity:430/728 - (59%) Gaps:135/728 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 REDVRRMFQHAYDGYLRHASNYDELRPLTCDGHDTWGSYSLTLIDALDTLATMGNFTEFRRAARL 106
            ||.|::||.|||:|||.||...|||:|:||.|.|||||:||:||||||||..|||.||||||..|
 Worm    43 REKVQKMFYHAYNGYLDHAFPLDELKPITCVGQDTWGSFSLSLIDALDTLLVMGNTTEFRRAVSL 107

  Fly   107 LEEKMDFDRDINVSVFETNIRIVGGLLSAHLLS---KRAGVELEPGWPCKGPLLRLAEDVARRLL 168
            :.||...|.::||||||||||:||||:|||:|:   |...|:.| |:||..|||:||..:|.||:
 Worm   108 VLEKARDDANVNVSVFETNIRVVGGLISAHMLAGRHKDLVVDWE-GYPCDSPLLKLAVKMADRLM 171

  Fly   169 PAFVTNTGMPYGTVNLRYGVPKGETSITCTAGVGTFLIEFGTLSRLTGKTIYEDVAMKAVHALWA 233
            |||.|.||||||||||:|||.|.||.||||||||||||||||||||||...||.||:||:.|||:
 Worm   172 PAFNTETGMPYGTVNLKYGVHKDETPITCTAGVGTFLIEFGTLSRLTGDDKYEKVALKALDALWS 236

  Fly   234 YRSPIGLFGNHIDVQSGRWTALDSGIGAGVDSLFEYLVKASVLLNRPELLELFHEARAAIDKYMR 298
            .||||||.||||:||:|:|||.||||||||||.||||.|.:.|..||.|::.|||...:|:|::|
 Worm   237 TRSPIGLVGNHINVQTGQWTATDSGIGAGVDSYFEYLAKGAYLFRRPSLMKQFHEHATSINKHVR 301

  Fly   299 KEDWYVWVGMNKGRVTLPVFQSLEAFWPGILSIIGDTEPALRTISRYIGVWKKYGFLPEFYNIAA 363
            |.:|::||.|.||.|:||:||||||||||.|:::||.:.|.|.:..|..|.:||||.||||||..
 Worm   302 KGEWFMWVSMAKGSVSLPIFQSLEAFWPGTLTMVGDVQDASRIMLTYSEVIRKYGFPPEFYNIHN 366

  Fly   364 GEASPNREVYPLRPELIESAMYLYRATGNEYLLEFGEHMLETLEFSAKTKCGYATIRNVVTHEKE 428
            .|....|..:|||||::||.|||||||.:|..||.|..|::.:|.||:||||||||.||..|..|
 Worm   367 EEPGEKRAAFPLRPEMVESLMYLYRATKDETWLELGAEMIDAIESSARTKCGYATINNVKEHSIE 431

  Fly   429 NRMESFFLAETSKYLYLLFDEENFLHNDGSGGELLSTEDDV-CVVQAGAYIFNTEAHPMDMSALH 492
            :||||||||||:||||||||..||:|:.|....:|::..:: ||:..|.|||||||||:|...|.
 Worm   432 DRMESFFLAETTKYLYLLFDPTNFIHSKGDQARILTSPKNLTCVIYGGGYIFNTEAHPVDPGMLD 496

  Fly   493 CCHAHNEDIYTSLDLQRFSPRAILERSKKRQVAVQEQWVPQCHPENNEFFNKEDESVQAQDSEKE 557
            ||.                    ::..:.::|.|::             .|..||..:...:||.
 Worm   497 CCS--------------------VQAKRDQEVGVKQ-------------VNNGDEHEKMNRTEKG 528

  Fly   558 QER---EQSGTSTTMAVDIEVFDEFQQPAGDLLVSNFEQIREERE-LNESLHRNVVARNQLTV-- 616
            .|:   .|.|.:..: ::.||.::.::.      |...:|..|.| :.|:.|:.::...::.|  
 Worm   529 GEKYFENQYGKNENL-IEFEVDEKLKKE------SEKRKIELEAEKVKENSHKAMLKVREILVRA 586

  Fly   617 SDLDEFFAQRRESFASASEALNYVKTFMGNYTMDVAFIRGLQLYDTNMSSVLGTGAQKEYESRMR 681
            ...||...:..|:..||.:.::                   |||             |.|     
 Worm   587 HQKDEAMQRNGETSDSARKLMD-------------------QLY-------------KAY----- 614

  Fly   682 TLWQLYELQQQYVANIRVIQGLGLLTFPADGDRIPSHLTEVLDSLDKSAHLEHMDLQDLETRVSN 746
                                              |:|..| |::|:|.|.:|..:||.||     
 Worm   615 ----------------------------------PNHTAE-LENLNKEAIIEFEELQHLE----- 639

  Fly   747 TSSPQLAHIREVI 759
                   .|||::
 Worm   640 -------DIRELV 645

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edem1NP_001259152.1 Glyco_hydro_47 48..486 CDD:460241 276/441 (63%)
F10C2.5NP_506018.1 Glyco_hydro_47 49..489 CDD:460241 275/440 (63%)
PTZ00121 <501..642 CDD:173412 41/244 (17%)

Return to query results.
Submit another query.