DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment ssx and PAB8

DIOPT Version :9

Sequence 1:	NP_569908.1	Gene:	ssx / 31086	FlyBaseID:	FBgn0024987	Length:	485	Species:	Drosophila melanogaster
Sequence 2:	NP_001185184.1	Gene:	PAB8 / 841399	AraportID:	AT1G49760	Length:	671	Species:	Arabidopsis thaliana

Alignment Length:	501	Identity:	127/501 - (25%)
Similarity:	187/501 - (37%)	Gaps:	133/501 - (26%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MSNADKMQDQEHDDEQSS------DIEGSGDNVGRDDG-----TDDDDDSNGNMQQENGDGGNGG 54
            :.|.||..|.:...|..|      ..:.:.|..|:..|     .|.|:.:.|.:.:.||...|
plant   137 IKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLN-- 199

  Fly    55 DGQEHSGDEEQHHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPI 119
            |.|.:.|.......:|..|              ::...||:.:..|.:.::|.||..:|...|..
plant   200 DKQVYVGPFVHKLQRDPSG--------------EKVKFTNVYVKNLSESLSDEELNKVFGEFGVT 250

  Fly   120 NTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNG-------FYV--------RNKRLKVSYA 169
            .:|.||||.: |.|.|:|||:::...|:..|:..|||       ::|        |...||..:.
plant   251 TSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFE 314

  Fly   170 RPGGQSIKD-------TNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRY 227
                ||:|:       :||||.||..::.||.|...|:|:|.|....::||. :|..||..||.:
plant   315 ----QSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAF 374

  Fly   228 NKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKA---AQFMAQIGGGNGGGGGGPPHMGPG 289
            :..|||..||..:|..:..  ::|::|.||:.....||   ||| :|:...|     .||.:||.
plant   375 STPEEATRAITEMNGKMIV--TKPLYVALAQRKEDRKARLQAQF-SQMRPVN-----MPPAVGPR 431

  Fly   290 GPMHPPHHHNNHHHNNHHNPHMPPHHHQPQH----PHQHPQHHPQLHHMQHHHPNNHNNNHP--- 347
            ..|:||..              ||...|..:    |...||  |...:.|...|.......|
plant   432 MQMYPPGG--------------PPMGQQLFYGQGPPAMIPQ--PGFGYQQQLVPGMRPGGSPMPN 480

  Fly   348 -------NNHHHNNNNNNHHNMGG-----------PHPHHMQQMHPMG---------MNMGMGVN 385
                   ...............||           |.|...|||||.|         :|...|..
plant   481 FFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQPQQPSPMMQQQMHPRGRMYRYPQRDVNTMPGPT 545

  Fly   386 MGMGMGMGMPIHGGGGGGGGGGGGGGGGNFHHMAHRGEVFMLPLPI 431
            ..|   :.:|.....|||              :.||......|:||
plant   546 QNM---LSVPYDVSSGGG--------------VHHRDSPTSQPVPI 574

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	28/94 (30%)
ssx	NP_569908.1	RRM_SF	179..257	CDD:302621	28/77 (36%)
PAB8	NP_001185184.1	PABP-1234	46..646	CDD:130689	127/501 (25%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910