Protein Alignment ssx and PAB8

DIOPT Version :10

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_564554.1
• Gene: PAB8 / 841399
• AraportID: AT1G49760
• Length: 671
• Species: Arabidopsis thaliana
• Alignment Length: 501
• Identity: 127/501 - (25%)
• Similarity: 187/501 - (37%)
• Gaps: 133/501 - (26%)

  Fly     1 MSNADKMQDQEHDDEQSS------DIEGSGDNVGRDDG-----TDDDDDSNGNMQQENGDGGNGG 54
            :.|.||..|.:...|..|      ..:.:.|..|:..|     .|.|:.:.|.:.:.||...|
plant   137 IKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLN-- 199

  Fly    55 DGQEHSGDEEQHHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPI 119
            |.|.:.|.......:|..|              ::...||:.:..|.:.::|.||..:|...|..
plant   200 DKQVYVGPFVHKLQRDPSG--------------EKVKFTNVYVKNLSESLSDEELNKVFGEFGVT 250

  Fly   120 NTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNG-------FYV--------RNKRLKVSYA 169
            .:|.||||.: |.|.|:|||:::...|:..|:..|||       ::|        |...||..:.
plant   251 TSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFE 314

  Fly   170 RPGGQSIKD-------TNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRY 227
                ||:|:       :||||.||..::.||.|...|:|:|.|....::||. :|..||..||.:
plant   315 ----QSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAF 374

  Fly   228 NKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKA---AQFMAQIGGGNGGGGGGPPHMGPG 289
            :..|||..||..:|..:..  ::|::|.||:.....||   ||| :|:...|     .||.:||.
plant   375 STPEEATRAITEMNGKMIV--TKPLYVALAQRKEDRKARLQAQF-SQMRPVN-----MPPAVGPR 431

  Fly   290 GPMHPPHHHNNHHHNNHHNPHMPPHHHQPQH----PHQHPQHHPQLHHMQHHHPNNHNNNHP--- 347
            ..|:||..              ||...|..:    |...||  |...:.|...|.......|
plant   432 MQMYPPGG--------------PPMGQQLFYGQGPPAMIPQ--PGFGYQQQLVPGMRPGGSPMPN 480

  Fly   348 -------NNHHHNNNNNNHHNMGG-----------PHPHHMQQMHPMG---------MNMGMGVN 385
                   ...............||           |.|...|||||.|         :|...|..
plant   481 FFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQPQQPSPMMQQQMHPRGRMYRYPQRDVNTMPGPT 545

  Fly   386 MGMGMGMGMPIHGGGGGGGGGGGGGGGGNFHHMAHRGEVFMLPLPI 431
            ..|   :.:|.....|||              :.||......|:||
plant   546 QNM---LSVPYDVSSGGG--------------VHHRDSPTSQPVPI 574

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	sex-lethal	<76..272	CDD:273740	66/220 (30%)
PAB8	NP_564554.1	PABP-1234	46..646	CDD:130689	127/501 (25%)