Protein Alignment ssx and rbms2b

DIOPT Version :10

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_001003541.1
• Gene: rbms2b / 445147
• ZFINID: ZDB-GENE-040801-51
• Length: 400
• Species: Danio rerio
• Alignment Length: 314
• Identity: 77/314 - (24%)
• Similarity: 125/314 - (39%)
• Gaps: 47/314 - (14%)

  Fly    47 NGDGGNGGDGQEHSGDEEQ----HHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYLPQDMTDR 107
            ||.....|..|.::...:|    ..:..:..|.:|:|.       |:.|.|||.|..|....||:
Zfish    15 NGYTSRTGKKQAYASSTQQMAPPSPNTTSSSNGSSSGG-------DQLSKTNLYIRGLHPGTTDQ 72

  Fly   108 ELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPG 172
            :|..|....|.|.:.|.:.|..|....||||||:.:.:.::.|:..|....|:.:..|.....|
Zfish    73 DLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPASAQKAVTALKASGVQAQMAKQQEQDP- 136

  Fly   173 GQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAI 237
                  ||||:.||..::::..|:.:..|:..::...|||| ..|..|||.|.|....|:.:..|
Zfish   137 ------TNLYISNLPLSMDEQELESMLKPFSQVISTRILRD-ANGTSRGVGFARMESTEKCEAII 194

  Fly   238 KALNN---TVPEG---GSQPIWVRLAEEHGKAKAAQFMAQIGGGNGGGGGGPPHMGPGGPMHPPH 296
            :..|.   ..|.|   .::|:..:.|:...|.:..|      |.....|......|..|.|...:
Zfish   195 QHFNGKYIKTPPGVAVPTEPLLCKFADGGQKKRQNQ------GKYHQNGRQWSREGETGGMTLTY 253

  Fly   297 HHNNHHHNNHHNP-------------HMPPHHHQPQHPHQHPQHHPQ-LHHMQH 336
            .......|..::|             .:.|:.|.|...:|  .|:|. :||..:
Zfish   254 DPTPALQNGFYSPSYSIAPNRIIAQTSISPYMHSPVSTYQ--VHNPSWIHHQSY 305

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	sex-lethal	<76..272	CDD:273740	56/201 (28%)
rbms2b	NP_001003541.1	RRM1_MSSP2	53..136	CDD:409901	26/82 (32%)
		RRM2_MSSP2	137..222	CDD:409904	25/85 (29%)