Protein Alignment ssx and cocoon

DIOPT Version :10

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_648764.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Alignment Length: 345
• Identity: 75/345 - (21%)
• Similarity: 125/345 - (36%)
• Gaps: 88/345 - (25%)

  Fly    21 EGSGDN----VGRDDGT-------DDDDDSNGNMQQENGD-----GGNGGDGQEHSGDEE----Q 65
            |..||.    ...:|||       ....:|:| :|..|.|     |....:|:.:|..||    :
  Fly     8 EKEGDEPIELPAEEDGTLLLSTLQAQFPESSG-LQYRNVDTKAVRGVRSNEGRLYSPSEETGWGE 71

  Fly    66 HH------------SQDNEGNDNSAGQQQQMQQVDRTSA----TNLIINYLPQDMTDRELYNLFS 114
            :|            |:||..|..:        :..||.|    .:||:..|..:.|:::|...|.
  Fly    72 YHYFCVFPKKNKRQSEDNLENSTA--------KTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFE 128

  Fly   115 GCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDT 179
            ..|.:...:|.:|.::|:|.|:|||.:.:.......:.|.:....|...:||..:|..|.. :..
  Fly   129 TYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKRHSIDGRWCEVKVPASRGMGNQ-EPG 192

  Fly   180 NLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRP-RGVAFVRYNKREEAQEAIKALNNT 243
            .::|...:.:|..|.|...||.:|.::      |....:| |..:||.:            |:..
  Fly   193 KVFVGRCTEDIEADDLREYFSKFGEVI------DVFIPKPFRAFSFVTF------------LDPY 239

  Fly   244 VPEGGSQPIWVRLAEEH-----------GKAKAAQFMAQIGGGNGGGGGGPPHMGPGGPMHPPHH 297
            ||.       |...|:|           ...|..|...|:...|...     ::.....|.|.::
  Fly   240 VPR-------VVCGEKHIIKGVSVHVSTADKKNVQNKNQLFQTNNYN-----NLDNNFKMQPANN 292

  Fly   298 HNNHHHNNHHNPHMPPHHHQ 317
            ...|..||.......||.:|
  Fly   293 FRMHPANNFSMHSFNPHGYQ 312

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	sex-lethal	<76..272	CDD:273740	44/211 (21%)
cocoon	NP_648764.1	TDP43_N	3..78	CDD:465833	17/70 (24%)
		RRM1_TDP43	108..181	CDD:409760	18/72 (25%)
		RRM2_TDP43	193..262	CDD:409761	18/93 (19%)