Protein Alignment ssx and Pabpc4

DIOPT Version :10

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_001423635.1
• Gene: Pabpc4 / 298510
• RGDID: 1305015
• Length: 660
• Species: Rattus norvegicus
• Alignment Length: 251
• Identity: 70/251 - (27%)
• Similarity: 115/251 - (45%)
• Gaps: 40/251 - (15%)

  Fly    93 TNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGF 157
            ||:.|....:::.|..|..|||..|...:.|:|||. :|.|.|:|||.|:...|:..|::::||.
  Rat   191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGK 254

  Fly   158 YVRNKRLKVSYARPGGQ------------------SIKDTNLYVINLSRNINDDMLDRIFSPYGL 204
            .:..|.:.|..|:...:                  ..:..|||:.||...|:|:.|.:.|||:|.
  Rat   255 EMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGS 319

  Fly   205 IVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKA---A 266
            |....::.:  .||.:|..||.::..|||.:|:..:|..:.  ||:|::|.||:...:.||   .
  Rat   320 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GSKPLYVALAQRKEERKAHLTN 380

  Fly   267 QFMAQIGGGN-------------GGGGGGPPHMGPGGPMHPPHHHNNHHHNNHHNP 309
            |:|.::.|..             ..||...|.: |.....||::..|.......||
  Rat   381 QYMQRVAGMRALPANAILNQFQPAAGGYFVPAV-PQAQGRPPYYTPNQLAQMRPNP 435

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	sex-lethal	<76..272	CDD:273740	60/199 (30%)
Pabpc4	NP_001423635.1	PABP-1234	11..640	CDD:130689	70/251 (28%)