Protein Alignment ssx and Pabpc1l

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: XP_038962521.1
• Gene: Pabpc1l / 296351
• RGDID: 1563142
• Length: 669
• Species: Rattus norvegicus
• Alignment Length: 191
• Identity: 57/191 - (29%)
• Similarity: 98/191 - (51%)
• Gaps: 23/191 - (12%)

  Fly    93 TNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGF 157
            ||:.:..|..||.::.|.:|||..|...:.|:||| ..|.|.|:||::::...:::.|:..:||.
  Rat   191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVDHMNGK 254

  Fly   158 YVRNKRLKVSYARPGGQ------------------SIKDTNLYVINLSRNINDDMLDRIFSPYGL 204
            .|..:.|.|..|:...:                  ..:..||||.||..:||||.|..:||.||:
  Rat   255 EVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGV 319

  Fly   205 IVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKA 265
            |....::.:  :...:|..||.::..|||.:|:..:|..:.  |::|::|.||:...:.||
  Rat   320 ITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIV--GTKPLYVALAQRKEERKA 376

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	26/79 (33%)
		RRM_SF	179..257	CDD:302621	27/77 (35%)
Pabpc1l	XP_038962521.1	PABP-1234	11..656	CDD:130689	57/191 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910