Protein Alignment ssx and Pabpc1l

DIOPT Version :10

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: XP_063141283.1
• Gene: Pabpc1l / 296351
• RGDID: 1563142
• Length: 655
• Species: Rattus norvegicus
• Alignment Length: 191
• Identity: 57/191 - (29%)
• Similarity: 98/191 - (51%)
• Gaps: 23/191 - (12%)

  Fly    93 TNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGF 157
            ||:.:..|..||.::.|.:|||..|...:.|:||| ..|.|.|:||::::...:::.|:..:||.
  Rat   191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVDHMNGK 254

  Fly   158 YVRNKRLKVSYARPGGQ------------------SIKDTNLYVINLSRNINDDMLDRIFSPYGL 204
            .|..:.|.|..|:...:                  ..:..||||.||..:||||.|..:||.||:
  Rat   255 EVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGV 319

  Fly   205 IVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKA 265
            |....::.:  :...:|..||.::..|||.:|:..:|..:.  |::|::|.||:...:.||
  Rat   320 ITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIV--GTKPLYVALAQRKEERKA 376

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	sex-lethal	<76..272	CDD:273740	57/191 (30%)
Pabpc1l	XP_063141283.1	None