DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssx and Elavl2

DIOPT Version :10

Sequence 1:NP_569908.1 Gene:ssx / 31086 FlyBaseID:FBgn0024987 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_063143296.1 Gene:Elavl2 / 286973 RGDID:628611 Length:389 Species:Rattus norvegicus


Alignment Length:182 Identity:87/182 - (47%)
Similarity:118/182 - (64%) Gaps:0/182 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 SATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLN 155
            |.||||:|||||:||..||.:||...|.|.:||::||..||.|.|||||:|....|:|.||..||
  Rat    66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 130

  Fly   156 GFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPR 220
            |..::.|.:|||||||...||:|.||||..|.:.:....|:::||.||.|:...||.|::||..|
  Rat   131 GLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISR 195

  Fly   221 GVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAAQFMAQI 272
            ||.|:|::||.||:||||.||...|.|.::||.|:.|....:......::|:
  Rat   196 GVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQL 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssxNP_569908.1 sex-lethal <76..272 CDD:273740 86/180 (48%)
Elavl2XP_063143296.1 None

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