DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssx and RBM14

DIOPT Version :9

Sequence 1:NP_569908.1 Gene:ssx / 31086 FlyBaseID:FBgn0024987 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_006319.1 Gene:RBM14 / 10432 HGNCID:14219 Length:669 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssxNP_569908.1 RRM_SF 93..173 CDD:302621
RRM_SF 179..257 CDD:302621
RBM14NP_006319.1 RRM1_CoAA 1..71 CDD:241052
PABP-1234 <3..280 CDD:130689
RRM2_CoAA 79..146 CDD:241053
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..175
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 193..232
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 284..303
TRBP-interacting domain, interaction with STIL. /evidence=ECO:0000269|PubMed:25385835 307..354
PRK13875 <319..433 CDD:237537
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 566..590
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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