DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lztr1 and hcfc1a

DIOPT Version :10

Sequence 1:NP_001259114.1 Gene:Lztr1 / 31037 FlyBaseID:FBgn0040344 Length:998 Species:Drosophila melanogaster
Sequence 2:NP_001038529.2 Gene:hcfc1a / 564853 ZFINID:ZDB-GENE-030912-10 Length:1802 Species:Danio rerio


Alignment Length:469 Identity:106/469 - (22%)
Similarity:177/469 - (37%) Gaps:107/469 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 TSPGSYSCNALNVDFTSYTATHQWTRMLECAEFVGAKRSKHTVVAYKDAMFVFGGDNGKNMLNDL 279
            ||||....       |......:|.|:|..:..|...|..|..||.|:.|.||||.| :.::::|
Zfish     2 TSPGVPGT-------TGAPLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGN-EGIVDEL 58

  Fly   280 IRFGVKDKSWGRACATGTPPAPRYHHSAVVAGSSMFIFGG------YTGDIHSNSNLTNKNDLFE 338
            ..:......|......|..|.....:..|..|:.:.:|||      |:.|:              
Zfish    59 HVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDL-------------- 109

  Fly   339 YKFQSAMWVEWK-------FSGRQPVPRSAHGAAVYDNKMWIYAGYDGNAR---------LNDMW 387
            |:.|::.| |||       .:|..|.||..|..::..||.:::.|...::.         |||::
Zfish   110 YELQASRW-EWKKLKPKAPKNGVPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLY 173

  Fly   388 TLNLTGENQ---WEEVDQLGDRPP-----TCCNFPVAVARDA-MYVFSGQSGLQITNSLFEFHFK 443
            ||.|...:.   |:.....|..||     |...:...|.:.: :.::.|.||.:: ..|:.....
Zfish   174 TLELRPGSSVAGWDVPVTYGVLPPPRESHTAVIYTEKVTKKSRLVIYGGMSGCRL-GDLWTLDID 237

  Fly   444 TRTWRRISNEPVLRGATSAPPSRRYGHTMVHHDRFLYVFGG--------------SADSTLPNDL 494
            |.||    |:|.:.||...|.|.....|:.:.   :|||||              ..:....|.|
Zfish   238 TLTW----NKPAISGAAPLPRSLHSATTITNK---MYVFGGWVPLVMDDVKVATHEKEWKCTNTL 295

  Fly   495 HCYDLDSQVW-SVIQPEQNSDVPSGRVFHASAVICDAMYIFGGTVDNSVRRGDTYRFQFSSYPKC 558
            .|.:||:..| :|:......::|..|..|.:..|.:.:||:.|                      
Zfish   296 ACLNLDTLAWETVLMDTLEDNIPRARAGHCAVAINNRLYIWSG---------------------- 338

  Fly   559 TLRDDFGKFFQDKQFCDIQFIVGAEEIRILAHIAFVAARSKYLRNK--ILAAREARQQQMEKVYG 621
              ||.:.|.:.::..|...:.:..|.....:.:..|.|.:..|...  .::..:....|::| |.
Zfish   339 --RDGYRKAWNNQVCCKDLWYLETERPNPPSRVQLVRANTNSLEVSWGAVSTADTYLLQLQK-YD 400

  Fly   622 VGQVDAL---ALNA 632
            :....|.   ||||
Zfish   401 IPAATAATSPALNA 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lztr1NP_001259114.1 NanM 252..551 CDD:442289 81/344 (24%)
KELCH repeat 252..298 CDD:276965 14/45 (31%)
KELCH repeat 302..355 CDD:276965 14/65 (22%)
KELCH repeat 359..407 CDD:276965 13/59 (22%)
KELCH repeat 410..455 CDD:276965 9/45 (20%)
KELCH repeat 467..509 CDD:276965 13/56 (23%)
BTB1_POZ_LZTR1 551..704 CDD:349617 16/87 (18%)
BACK1_LZTR1 708..766 CDD:350580
BTB2_POZ_LZTR1 781..906 CDD:349618
BACK2_LZTR1 902..962 CDD:350581
hcfc1aNP_001038529.2 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.