DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lztr1 and slim

DIOPT Version :10

Sequence 1:NP_001259114.1 Gene:Lztr1 / 31037 FlyBaseID:FBgn0040344 Length:998 Species:Drosophila melanogaster
Sequence 2:NP_523782.1 Gene:slim / 37121 FlyBaseID:FBgn0261477 Length:609 Species:Drosophila melanogaster


Alignment Length:633 Identity:120/633 - (18%)
Similarity:213/633 - (33%) Gaps:212/633 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 SPGSYSCNALNVDFTSYTATHQWTRMLECAEFVGAKRSKHTVVAYKDAMFVFGGDNGKNMLNDLI 280
            :||.:.|...:      ...|.||.:|...:|:........:.|:::.:.....:|..|  ||||
  Fly     5 NPGKFKCIVFD------QLRHTWTFLLFICDFLAKIYRTPRITAHQEQLANHNNNNNNN--NDLI 61

  Fly   281 -RFGVKDKSWGRACATGTPPAPRYHHSAVV--------------AGSSM-----------FIFGG 319
             ...:.::..|:.    ....|:..:..||              |.|.:           .:...
  Fly    62 MEQDMPEEEVGQP----EEALPQQDNGEVVDRFNAIQAAVELMDAASDLDEEEEEEDDDVDVDVD 122

  Fly   320 YTGDIHSNSNL--------TNKNDLFE-----------------------------YKFQSAMWV 347
            | ||..|.|..        |:.:|..:                             |.||....|
  Fly   123 Y-GDTDSESEFEEMYSDEWTSSSDELDEGTELSKSVLNVFLSSDKQQSQMAGQIPMYAFQPLRLV 186

  Fly   348 EWKF-----SGRQPVPRSAHGAAVYDNKMWIYAGYDGNARLN-----------DMWTLNLTGENQ 396
            :.::     .|..|:.||.|.....::.::...||:..:.::           ::|:.|. ....
  Fly   187 KCQYRDKHIPGGFPLARSGHRIIASNSHLYSLGGYNPRSAMSASRHGRCLLFQELWSYNF-ATRT 250

  Fly   397 WEEVDQLGDRPPTCCNFPVAVARDAMYVFSG----------QSGLQITNSLFEFHFKTRTWRRIS 451
            |......|:    ..|.||.:|.:|:.:.:.          ..|:..:|..:.:    ||     
  Fly   251 WRLELNAGN----AANMPVELASNALTIHNNVLISHGGTGYPFGVSCSNDCYVY----RT----- 302

  Fly   452 NEPVLRGATSAP---------PSRRYGHTMVHHDRFLYVFGGSADSTLPNDLHCYDLDSQVWS-- 505
               ...|||...         |:.:||..:|.|..|||..||:.......|::..||.:.:|.  
  Fly   303 ---ASAGATPGVDRLQVKGDLPTAQYGPGIVIHKHFLYTIGGTTGFDYTCDVYRLDLRTGIWENV 364

  Fly   506 -VIQPEQNSDVPSGRVFHASAVICDAMYIF--GGTVDNSV---RRGDTYRFQ------FSSYP-- 556
             :.:||...| |.||..|  .|:.|..:||  ||...:||   :|...|..:      |.:||  
  Fly   365 YISRPEMRDD-PEGRYRH--EVVYDGKHIFVLGGGTSHSVYDLQRIPAYNLEANCWDYFETYPDQ 426

  Fly   557 KCTLRDDFGKFFQDKQFC-----------DIQ-FIVG---AEEIRILAHIAFVAARSKY---LRN 603
            :....||..:.:...:.|           ||: ||.|   .:.....:.|..:..|:|:   :..
  Fly   427 RAADADDGNRGYPKPRKCFSCVQHQSSTGDIEAFITGGLQGDFSTYFSDIWKLNLRTKHWYRIET 491

  Fly   604 KILAAREARQQQMEKVYGVGQVDALALNAGAGGDRGPMLEVRLANASPEAFEIILNYIY--TDRI 666
            .||..                  .|..::.|..|.|.|                  |::  .:.|
  Fly   492 AILPR------------------PLYFHSAAHSDNGCM------------------YVFGGIEYI 520

  Fly   667 DLKDTYSKNIIILITDIYQLAGLFTMPRLAHGCIQYLDYKINKLNVLE 714
            | |:...:|      |:|::  ..|:|:|:..|...:.|..:.|::.:
  Fly   521 D-KEMRRRN------DLYKM--WMTVPKLSEMCWDAITYYNDNLDLYD 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lztr1NP_001259114.1 NanM 252..551 CDD:442289 78/404 (19%)
KELCH repeat 252..298 CDD:276965 8/46 (17%)
KELCH repeat 302..355 CDD:276965 16/119 (13%)
KELCH repeat 359..407 CDD:276965 9/58 (16%)
KELCH repeat 410..455 CDD:276965 9/54 (17%)
KELCH repeat 467..509 CDD:276965 13/44 (30%)
BTB1_POZ_LZTR1 551..704 CDD:349617 32/180 (18%)
BACK1_LZTR1 708..766 CDD:350580 1/7 (14%)
BTB2_POZ_LZTR1 781..906 CDD:349618
BACK2_LZTR1 902..962 CDD:350581
slimNP_523782.1 NanM 197..516 CDD:442289 76/374 (20%)
KELCH repeat 203..263 CDD:276965 9/64 (14%)
KELCH repeat 267..321 CDD:276965 9/65 (14%)
KELCH repeat 324..364 CDD:276965 13/39 (33%)
KELCH repeat 442..495 CDD:276965 10/52 (19%)
Blue background indicates that the domain is not in the aligned region.

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