DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment: Appl and CG3513

Sequence 1:NP_001245448.1 Gene:Appl FlyBaseID:FBgn0000108 Length:890 Species:Drosophila melanogaster
Sequence 2:NP_608798.1 Gene:CG3513 FlyBaseID:FBgn0031559 Length:88 Species:Drosophila melanogaster

Alignment Length:52 Identity:15/53 (28%)
Similarity:21/53 (40%) Gaps:14/53 (26%)


  Fly   118 GSHRWI--KPFRCLGPFQSDALLVPEG--CL-------FDHIHNASRCWPFV 158
            ||..|:  ||..|..| .|...:..:|  |:       :|...||  |..|:
  Fly    17 GSRLWVHAKPEMCQQP-SSMVGMAQDGAACMAFMPAWTYDASKNA--CTEFI 65

Known Domains:


GeneSequenceDomainRegion External IDIdentity
ApplNP_001245448.1 A4_EXTRA 26..198 CDD:128326 15/53 (28%)
APP_N 33..141 CDD:280358 8/25 (32%)
APP_Cu_bd 143..198 CDD:289676 6/24 (25%)
APP_E2 387..580 CDD:289677
GBP_C <629..682 CDD:303769
APP_amyloid 834..887 CDD:287486
CG3513NP_608798.1 KU 29..87 CDD:238057 10/41 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG4295
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
RoundUp 1 1.030 avgDist Average_Evolutionary_Distance R2378
21.930

Return to query results.
Submit another query.