Protein Alignment elav and Pabpc5

DIOPT Version :10

• Sequence 1: NP_525033.1
• Gene: elav / 31000
• FlyBaseID: FBgn0260400
• Length: 483
• Species: Drosophila melanogaster
• Sequence 2: NP_001103836.1
• Gene: Pabpc5 / 688518
• RGDID: 1587661
• Length: 382
• Species: Rattus norvegicus
• Alignment Length: 393
• Identity: 90/393 - (22%)
• Similarity: 159/393 - (40%)
• Gaps: 70/393 - (17%)

  Fly   134 GSGSQNGSNGSTE-TRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAP 197
            |||..|.:....: .:..|.|..|...:|||.:...|...|.:...::.||             |
  Rat     2 GSGEPNTAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRD-------------P 53

  Fly   198 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKG--ANLYVSGLPKTMT 260
            .....||||:||:..|.|||.|:|.:|...:..|..::.:::|.....|.  .|:::..|.|::.
  Rat    54 VTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSID 118

  Fly   261 QQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSSCTDPIVVK 325
            .:.|..:|:.||.|::.:::   .:|..:||..::.||....|.|||..:||...:: ....|.:
  Rat   119 NRALFYLFSAFGNILSCKVV---CDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNN-RQVYVGR 179

  Fly   326 FSNTPGSTSKIIQPQLPAFLN------------------------PQLVRRIGGAMHTPVNKGLA 366
            |.......:::.......|.|                        .:.|:.|..|.......|..
  Rat   180 FKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFV 244

  Fly   367 RFSPMAGDMLDVMLPNG---------LGAAAAAATTLA--------------SGPGGAYPIFIYN 408
            |:.........|:..:|         :|.|......||              :.|.|. ||:|.|
  Rat   245 RYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGV-PIYIKN 308

  Fly   409 LAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVL 473
            |.....:..|.:.|..||::...|::.:  ..|.||:|.|..::::||:.|:..:||..:|::.|
  Rat   309 LDETINDEKLKEEFSLFGSISRAKVMME--VGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTL 371

  Fly   474 QVS 476
            .|:
  Rat   372 HVT 374

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
elav	NP_525033.1	ELAV_HUD_SF	146..483	CDD:273741	86/381 (23%)
Pabpc5	NP_001103836.1	PABP-1234	22..>379	CDD:130689	85/373 (23%)