Protein Alignment elav and pabpc1l

DIOPT Version :10

• Sequence 1: NP_525033.1
• Gene: elav / 31000
• FlyBaseID: FBgn0260400
• Length: 483
• Species: Drosophila melanogaster
• Sequence 2: NP_956133.1
• Gene: pabpc1l / 327625
• ZFINID: ZDB-GENE-030131-5836
• Length: 620
• Species: Danio rerio
• Alignment Length: 372
• Identity: 84/372 - (22%)
• Similarity: 147/372 - (39%)
• Gaps: 111/372 - (29%)

  Fly   130 NGNAGSG-----SQNGSNGSTETR--------------------------------TNLIVNYLP 157
            ||:.|.|     :|..:|.:.||.                                ||:.:....
Zfish   135 NGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFG 199

  Fly   158 QTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNV 222
            :.:..::::::|:..|:..||.::.|:              :|:|.|:||||:|...||.:||..
Zfish   200 EDIDSEKLKNIFTEFGKTLSVCVMTDE--------------RGRSRGFGFVNFVNHGDARRAVTE 250

  Fly   223 LNGLRLQNKT---------------IKVSFARPSSDAI---KGANLYVSGLPKTMTQQELEAIFA 269
            :||..|..:.               :|..|.:...:.|   :|.||||..|..::..::|...||
Zfish   251 MNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFA 315

  Fly   270 PFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTS 334
            |:|.|.:::::.:.|:   ::|.||:.|...||||:|:..:||...|  |.|:.|..:..
Zfish   316 PYGTITSAKVMTDGGH---SRGFGFVCFSSPEEATKAVTEMNGRIVS--TKPLYVALAQR----- 370

  Fly   335 KIIQPQLPAFLNPQLVRRIGGAMHTPVNKGLARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPG 399
               :.:..|.|..|.::|            ||....:.|..:......|.|....:...:.|
Zfish   371 ---KEERKAILTNQYIQR------------LASIRAIPGPAIPTTYQQGSGYYMTSVPQVRS--- 417

  Fly   400 GAYPIFIYNLAPETEEAALW-----QLFGPFGAVQSVK--IVKDPTT 439
                  .||..|....|..|     :..|||.| |.|:  :.:.|:|
Zfish   418 ------FYNAVPNLRPAPRWAFQAPRTQGPFPA-QFVRQAVPRRPST 457

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
elav	NP_525033.1	ELAV_HUD_SF	146..483	CDD:273741	78/351 (22%)
pabpc1l	NP_956133.1	PABP-1234	11..610	CDD:130689	84/372 (23%)