DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and Msc

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:XP_038965669.1 Gene:Msc / 312897 RGDID:1305496 Length:220 Species:Rattus norvegicus


Alignment Length:63 Identity:23/63 - (36%)
Similarity:35/63 - (55%) Gaps:10/63 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 NARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDMLDD 151
            |||||.|::.::..|..|:..||....::          ||||:||||:|..||..|:.:|.:
  Rat   110 NARERARMRVLSKAFSRLKTSLPWVPPDT----------KLSKLDTLRLASSYIAHLRQLLQE 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 17/54 (31%)
MscXP_038965669.1 bHLH_TS_musculin 102..167 CDD:381546 23/63 (37%)

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