DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and hand2

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_001093695.1 Gene:hand2 / 100101704 XenbaseID:XB-GENE-481426 Length:210 Species:Xenopus tropicalis


Alignment Length:72 Identity:27/72 - (37%)
Similarity:38/72 - (52%) Gaps:15/72 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 VARR---NARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQ 146
            |.||   |.:||.|.:.:|:.|..||:.:|....::          ||||:.|||:|..||..|.
 Frog    91 VKRRGTANRKERRRTQSINSAFAELRECIPNVPADT----------KLSKIKTLRLATSYIAYLM 145

  Fly   147 DML--DD 151
            |:|  ||
 Frog   146 DLLAKDD 152

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 18/54 (33%)
hand2NP_001093695.1 bHLH_TS_HAND2 93..154 CDD:381477 26/70 (37%)

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