DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and AT4G20970

DIOPT Version :10

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_193829.2 Gene:AT4G20970 / 827844 AraportID:AT4G20970 Length:190 Species:Arabidopsis thaliana


Alignment Length:232 Identity:49/232 - (21%)
Similarity:88/232 - (37%) Gaps:59/232 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 PAPYNVDQSQSVQRRNARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVDTLRI 154
            |:..|..||:||.|:.. |:||..|:.:.::.|...:|....|:           .::..|.|..
plant     3 PSHSNTGQSRSVDRKTV-EKNRRMQMKSLYSELISLLPHHSSTE-----------PLTLPDQLDE 55

  Fly   155 AVEYIRRLQDLVDDLNGGS-NIGANNAVTQLQLCLDESSSHSSSSSTCSSSGHNTYYQNTISVSP 218
            |..||::||..|:...... |:.|...:.:|         :|..||:.|||         :.||.
plant    56 AANYIKKLQVNVEKKRERKRNLVATTTLEKL---------NSVGSSSVSSS---------VDVSV 102

  Fly   219 LQQQQQLQRQQ----FNHQPLTALS----------LNTNLVGTSVPGGDAGCVSTSKNQQTCHSP 269
            .::..:::.|:    |:...:|:|.          :.|..:|..:.......|..:. ..|.|..
plant   103 PRKLPKIEIQETGSIFHIFLVTSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAV-FHTLHCK 166

  Fly   270 TSSFNSSMSFDSGTYEGVPQQISTHLDRLDHLDNELH 306
            ..      ..|.|....:|       :||:.:.|.:|
plant   167 VE------EHDYGARSQIP-------ERLEKIVNSVH 190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 bHLH_TS_dAS-C_like 100..166 CDD:381587 17/65 (26%)
AT4G20970NP_193829.2 bHLH_AtORG2_like 12..87 CDD:381484 21/95 (22%)

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