DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and HLH3B

DIOPT Version :10

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:XP_562042.4 Gene:HLH3B / 3291000 VectorBaseID:AGAMI1_007526 Length:407 Species:Anopheles gambiae


Alignment Length:269 Identity:64/269 - (23%)
Similarity:112/269 - (41%) Gaps:62/269 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 SSLSPGSSPAPYNVDQSQSVQRR---NARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPH 143
            :.|..|||    :::.|.:|.|:   |.|||.|.:.|:.:||.||:.:|.           ..|.
Mosquito   134 TKLGIGSS----SINGSGAVVRKMFTNTRERWRQQNVSGAFAELRKLVPT-----------HPPD 183

  Fly   144 KKISKVDTLRIAVEYIRRLQDLVD--------DLNGGSNIGANNAVTQLQLCLDESSSHSSSSST 200
            ||:||.:.||:|:.|||.|.::::        ||.......::....|| |.:.:::.|:.....
Mosquito   184 KKLSKNEILRMAIRYIRLLTNVLEWQKKQEANDLRTPLKQRSSQQSQQL-LSISQTTGHAIQQQH 247

  Fly   201 CSSSGHNT--YYQN----TISVSP---------LQQQQQLQRQQFNHQPLTALSLNTNL-----V 245
            .::..|.|  |.:|    .:.|||         ..:..:|:.:......:..:.|.:.|     :
Mosquito   248 SNNENHFTGNYRENGNNLLMIVSPKSFAKSTNSSNRTVKLESKMEQCVEIEKIKLVSKLCPPGKM 312

  Fly   246 GTSVPGGDAGCVSTSKNQQTCHSPTSSFNSSMSFDSG------TYEGVPQQISTHLDRLDHLDNE 304
            ....||..:|   ::||::.....|....|.:...:.      .|..||..:.|.:.|      |
Mosquito   313 AKPGPGASSG---SAKNRRKTMGSTVHMRSGLHIKTDLMALAQPYGTVPTMMETEIKR------E 368

  Fly   305 LHTHSQLQL 313
            |..|||:.|
Mosquito   369 LTHHSQMAL 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 bHLH_TS_dAS-C_like 100..166 CDD:381587 25/68 (37%)
HLH3BXP_562042.4 None

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