Protein Alignment sc and HLH4C

DIOPT Version :10

• Sequence 1: NP_476803.1
• Gene: sc / 30982
• FlyBaseID: FBgn0004170
• Length: 345
• Species: Drosophila melanogaster
• Sequence 2: NP_001259243.1
• Gene: HLH4C / 31397
• FlyBaseID: FBgn0011277
• Length: 191
• Species: Drosophila melanogaster
• Alignment Length: 196
• Identity: 47/196 - (23%)
• Similarity: 75/196 - (38%)
• Gaps: 57/196 - (29%)

  Fly     3 NNNNTTKSTTMSSSVLSTNETFPTTINSATKIFRYQHIMPAPSPLIPGGNQNQPAGTMPIKTRKY 67
            ||.:.......:|:.|..::.|...:...|.      ..|||.|        .|.   |...|:.
  Fly    33 NNPHLVNEDYAASTTLDIDKRFQARMACETA------AQPAPPP--------PPT---PAPRRRT 80

  Fly    68 TPRGMALTRCSESVSSLSPGSSPAPYNVDQSQSVQRRNA----------RERNRVKQVNNSFARL 122
            ||           ::.|.|...   ..:.:.:..:||.|          |||.||:..|.|||.|
  Fly    81 TP-----------IAHLDPSEL---VGLSREERRRRRRATLKYRTAHATRERIRVEAFNVSFAEL 131

  Fly   123 RQHIPQSIITDLTKGGGRGPHKKISKVDTLRIAVEYIRRLQDLVDDLNGGSNIGANNAVTQLQLC 187
            |:.:|.           ..|.||:||::.|::|:.||..|..:::  .. .:.||::..|.   |
  Fly   132 RKLLPT-----------LPPDKKLSKIEILKLAICYIAYLNHVLE--TPXDSAGASSFATS---C 180

  Fly   188 L 188
            |
  Fly   181 L 181

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sc	NP_476803.1	bHLH_TS_dAS-C_like	100..166	CDD:381587	25/75 (33%)
HLH4C	NP_001259243.1	bHLH_TS_HEN1	105..165	CDD:381544	23/70 (33%)