DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and Twist1

DIOPT Version :10

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_035788.1 Gene:Twist1 / 22160 MGIID:98872 Length:206 Species:Mus musculus


Alignment Length:124 Identity:36/124 - (29%)
Similarity:50/124 - (40%) Gaps:36/124 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 SLSPGSSPAPYNVDQSQSVQRRNARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKIS 147
            |.|.|.||..|...|:|.|. .|.|||.|.:.:|.:||.||:.||..            |..|:|
Mouse    97 SSSGGGSPQSYEELQTQRVM-ANVRERQRTQSLNEAFAALRKIIPTL------------PSDKLS 148

  Fly   148 KVDTLRIAVEYIRRLQDLVDDLNGGSNIGANNAVTQLQLCLDESSSHSSSSSTCSSSGH 206
            |:.||::|..||..|..::                       :|....|..::||...|
Mouse   149 KIQTLKLAARYIDFLYQVL-----------------------QSDELDSKMASCSYVAH 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 bHLH_TS_dAS-C_like 100..166 CDD:381587 23/65 (35%)
Twist1NP_035788.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..109 6/11 (55%)
bHLH_TS_TWIST1 102..178 CDD:381418 30/111 (27%)
Sufficient for transactivation activity 165..195 5/43 (12%)

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