DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sc and Nhlh2

DIOPT Version :10

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_848892.1 Gene:Nhlh2 / 18072 MGIID:97324 Length:135 Species:Mus musculus


Alignment Length:121 Identity:38/121 - (31%)
Similarity:54/121 - (44%) Gaps:35/121 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 GMALTRCSESVSSLSP---------GSS-----PAPYNVDQSQSVQRRNA----------RERNR 111
            |.|.|:...|||.|.|         |.|     |.|..:.:.:..:||.|          |||.|
Mouse    25 GGADTKVLGSVSDLEPVEEADGDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIR 89

  Fly   112 VKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVDTLRIAVEYIRRLQDLVD 167
            |:..|.:||.||:.:|.           ..|.||:||::.||:|:.||..|..::|
Mouse    90 VEAFNLAFAELRKLLPT-----------LPPDKKLSKIEILRLAICYISYLNHVLD 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 bHLH_TS_dAS-C_like 100..166 CDD:381587 25/75 (33%)
Nhlh2NP_848892.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..81 15/55 (27%)
bHLH_TS_HEN2 63..135 CDD:381545 26/83 (31%)

Return to query results.
Submit another query.