DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sc and tal1

DIOPT Version :10

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001135468.1 Gene:tal1 / 100196924 XenbaseID:XB-GENE-479827 Length:388 Species:Xenopus tropicalis


Alignment Length:203 Identity:56/203 - (27%)
Similarity:85/203 - (41%) Gaps:61/203 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 MPAPSPLIPGGN-------QNQPAGTMPIKTRKYTPRGMALTRCSESVSSLSPG----------- 87
            :|.||...|...       |..|..::|::....|    .|...:::::|.:.|           
 Frog   170 IPLPSTGPPAEQAVEARMVQLSPTASLPLQAAGRT----MLYGLNQTLASGNSGYFDDPEAYPMF 230

  Fly    88 -------SSPAPYNVDQSQSVQRR-------NARERNRVKQVNNSFARLRQHIPQSIITDLTKGG 138
                   ..|.||.|:.|:..|.:       |:|||.|.:.||.:||.||:.||.          
 Frog   231 TNNSRVKRRPGPYEVEISEGPQTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPT---------- 285

  Fly   139 GRGPHKKISKVDTLRIAVEYIRRLQDLVDD-------LNGGSNIGANNAVTQLQLCLDESSSHSS 196
             ..|.||:||.:.||:|::||..|..|:||       .|.|:.   :|.:.|.:|..|..|.:||
 Frog   286 -HPPDKKLSKNEILRLAMKYINFLAKLLDDQEEEGNQRNKGNK---DNGMVQQELLQDMLSPNSS 346

  Fly   197 SSSTCSSS 204
                |.||
 Frog   347 ----CGSS 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 bHLH_TS_dAS-C_like 100..166 CDD:381587 25/72 (35%)
tal1NP_001135468.1 PHA03247 <6..195 CDD:223021 6/24 (25%)
bHLH_TS_TAL1 254..318 CDD:381549 27/74 (36%)

Return to query results.
Submit another query.