DRSC/TRiP Functional Genomics Resources

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Protein Alignment VSX1 and Scr

DIOPT Version :10

Sequence 1:NP_055403.2 Gene:VSX1 / 30813 HGNCID:12723 Length:365 Species:Homo sapiens
Sequence 2:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster


Alignment Length:331 Identity:79/331 - (23%)
Similarity:113/331 - (34%) Gaps:104/331 - (31%)


- Green bases have known domain annotations that are detailed below.


Human    59 AVAPCPGPGLDGSSLARGALPLGL-------GLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEP 116
            :||.....|:.|.|||..|...||       |:..|.|.             .:||...|.|   
  Fly   227 SVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPGN-------------VNVPMHSPGG--- 275

Human   117 AAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKK----------------- 164
                                    .|.||:|:..|:..:|...|..||                 
  Fly   276 ------------------------GDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTS 316

Human   165 --------RRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRK 221
                    :|.||.:|.:|..||||.|....|.....|..:|....|.|.:|::||||||.||:|
  Fly   317 TVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 381

Human   222 REKRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPGSED 286
            ..|....:.|....|.||    |  |.....::.::...|.: ..|...            |:. 
  Fly   382 EHKMASMNIVPYHMGPYG----H--PYHQFDIHPSQFAHLSAXDAWHFS------------GTGX 428

Human   287 KLAGLWGSDHFKEGSSQSESGSQRGSDKVSPENGLEDVAIDLSSSARQETKKVHPGAGAQGGSNS 351
            :|..|:...:....::.:.||.|  |....|..|   .::.:...|.      .||:.|.||||.
  Fly   429 RLNQLYQEPYQTAAAASAASGYQ--SQDGGPIGG---GSVGVGGGAG------GPGSLANGGSNG 482

Human   352 TALEGP 357
            :   ||
  Fly   483 S---GP 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VSX1NP_055403.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37
Octapeptide motif 31..38
PRK14959 <47..>149 CDD:184923 21/96 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 113..167 10/78 (13%)
Nuclear localization signal. /evidence=ECO:0000255 161..166 2/29 (7%)
Homeodomain 165..221 CDD:459649 24/55 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 290..365 17/68 (25%)
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 24/55 (44%)
Blue background indicates that the domain is not in the aligned region.

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