DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VSX1 and Vsx1

DIOPT Version :10

Sequence 1:NP_055403.2 Gene:VSX1 / 30813 HGNCID:12723 Length:365 Species:Homo sapiens
Sequence 2:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster


Alignment Length:402 Identity:135/402 - (33%)
Similarity:175/402 - (43%) Gaps:103/402 - (25%)


- Green bases have known domain annotations that are detailed below.


Human     4 RDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVAPCPGPGL 68
            ::|.|.|...|     |||..||.........|..|.:...:..|.|.|:|..|..    .|.|.
  Fly   207 KNSSSSGNGGS-----GGSGSGSGGGNPTSNGLGHLGSPTASNGGSGGGAGVGGSG----GGSGT 262

Human    69 DGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPALGRQK 133
            .||:.:..    |.|     |....:.:|:           .|.||..:|.||..:...|.....
  Fly   263 SGSNSSTS----GNG-----GNGGSSGSRS-----------SPAGPHHSAALAAHQHAAAAAAAA 307

Human   134 RSDSVSTS------DEDSQSE-------------------------------------DRNDLKA 155
            ...:.:.:      ...:|:.                                     :.|.|.|
  Fly   308 HHHAAAAAAAHHAHHAHAQAHAHAHAHVHAHAAHAAHAAHAHAHHAEAFLGAAGGAGGNPNSLLA 372

Human   156 S-------------PTLGKRKKRRH-RTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPED 206
            :             |...|:.|||| ||:||:.|||||||||.|||||||.|||:|::||.|.||
  Fly   373 AHGGDVLVGPGGTGPGGKKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAED 437

Human   207 RIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLGM 271
            |||||:|||||||||.||.||.|:.|||||||||||||.:|||::::.||:..  .|.|||||||
  Fly   438 RIQVWYQNRRAKWRKTEKCWGHSTKMAEYGLYGAMVRHSLPLPETIIKSAKED--ESVAPWLLGM 500

Human   272 HKKSMGMIRKPGSEDKLAGLWGSDHFKEGSSQSESGSQRGSDKVSPENGLEDVAIDLSSSARQET 336
            ||||:.......|::       ||.....|..:.:....||...||        |...|.:|...
  Fly   501 HKKSLEAAELLKSDE-------SDRETPTSDDTNTSYSAGSTHNSP--------ISSFSISRLLF 550

Human   337 KKVHPGAGAQGG 348
            ....|.||:.||
  Fly   551 DAPPPAAGSAGG 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VSX1NP_055403.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37 9/32 (28%)
Octapeptide motif 31..38 1/6 (17%)
PRK14959 <47..>149 CDD:184923 21/144 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 113..167 14/109 (13%)
Nuclear localization signal. /evidence=ECO:0000255 161..166 2/4 (50%)
Homeodomain 165..221 CDD:459649 44/56 (79%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 290..365 15/59 (25%)
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 44/56 (79%)

Return to query results.
Submit another query.