DRSC/TRiP Functional Genomics Resources

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Protein Alignment VSX1 and Vsx2

DIOPT Version :10

Sequence 1:NP_055403.2 Gene:VSX1 / 30813 HGNCID:12723 Length:365 Species:Homo sapiens
Sequence 2:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster


Alignment Length:435 Identity:155/435 - (35%)
Similarity:188/435 - (43%) Gaps:128/435 - (29%)


- Green bases have known domain annotations that are detailed below.


Human    18 VPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVA-----PCPGPGLD------GS 71
            :|..||       |||.:|||| |...|...|...:...|..||     |.|....:      .:
  Fly     1 MPQRSP-------FAIQELLGL-AVAAATEAPTDLTTTAGATVAKERQTPTPPKTTNATMATAAT 57

Human    72 SLARGALPLGL--GLLCGFG---TQPP-------------------------------------- 93
            |.|..|.|...  |.|....   .||.                                      
  Fly    58 SAATAATPTNAAEGNLTSVSEPQQQPQQQQQEQQHHQPHHHQYREHHQMTMAAASRMAYFNAHAA 122

Human    94 -AAARAPCLLLADV-----------PFLPPRGPEPAAPLAPSRPPP---------------ALG- 130
             |||..|..|.|.|           |...|..|..|.. .|..|||               |.| 
  Fly   123 VAAAFMPHQLAAAVHHHHQHQHQHHPHHHPHHPHGAVG-GPPPPPPMQHHHPHHPHHPLLHAQGF 186

Human   131 RQKRSDSV--------STSDEDSQSEDRNDLKASP-TLGKRKKRRH-RTVFTAHQLEELEKAFSE 185
            .|.:|.:.        |.:.:|...|..|.....| :..|:||||| ||:||::|||:||:||.|
  Fly   187 PQLKSFAAGAGTCLPGSLAPKDFGMESLNGFGVGPNSKKKKKKRRHSRTIFTSYQLEKLEEAFKE 251

Human   186 AHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCIPLPD 250
            ||||||||||||::||||||||||||||||||||||.||.||||::|||||||||||||.:||||
  Fly   252 AHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGSTIMAEYGLYGAMVRHSLPLPD 316

Human   251 SVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPGSEDKLAGLWGSDHFKEGSSQSESGSQRGSDKV 315
            ::|.||:..  .:.|||||||.:|.|.  ||        .:......|:.|..|:.....||...
  Fly   317 TILKSAKDN--DAVAPWLLGMEQKCMH--RK--------SIEAQSALKDDSGVSDHEDSAGSKSA 369

Human   316 SPENGLEDVAIDLS-------SSARQETKKVHPGAGAQGGSNSTA 353
            ..|        |||       ||:.:....|.|...:...|.||:
  Fly   370 HSE--------DLSRSRCHALSSSTESLNVVSPAPSSCPTSASTS 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VSX1NP_055403.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37 6/18 (33%)
Octapeptide motif 31..38 4/6 (67%)
PRK14959 <47..>149 CDD:184923 35/191 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 113..167 19/78 (24%)
Nuclear localization signal. /evidence=ECO:0000255 161..166 3/4 (75%)
Homeodomain 165..221 CDD:459649 47/56 (84%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 290..365 16/71 (23%)
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 47/56 (84%)
OAR 556..572 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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