DRSC/TRiP Functional Genomics Resources

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Protein Alignment hoxd4a and zen2

DIOPT Version :10

Sequence 1:NP_001119917.1 Gene:hoxd4a / 30329 ZFINID:ZDB-GENE-980526-214 Length:256 Species:Danio rerio
Sequence 2:NP_476794.1 Gene:zen2 / 40827 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster


Alignment Length:114 Identity:51/114 - (44%)
Similarity:70/114 - (61%) Gaps:10/114 - (8%)


- Green bases have known domain annotations that are detailed below.


Zfish   144 VVYPWMK-KVHVTTVNPDYTGPEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSE 207
            ::||.:: .|.........:..:.||||||::..|::|||:|||.|:||.|.|||||:..|.|:|
  Fly    20 MMYPCVELNVEAAPTATTRSSEKSKRSRTAFSSLQLIELEREFHLNKYLARTRRIEISQRLALTE 84

Zfish   208 RQIKIWFQNRRMKWKKDHKLPNTKG------RSASVGNQHAQHAQKDSQ 250
            ||:||||||||||.||.   .|.||      .|..:.:|.::..|||.|
  Fly    85 RQVKIWFQNRRMKLKKS---TNRKGAIGALTTSIPLSSQSSEDLQKDDQ 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hoxd4aNP_001119917.1 Homeodomain 167..223 CDD:459649 37/55 (67%)
zen2NP_476794.1 Homeodomain 44..100 CDD:459649 37/55 (67%)

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