DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sp212 and Hgfac

DIOPT Version :10

Sequence 1:NP_996209.2 Gene:Sp212 / 2768666 FlyBaseID:FBgn0053329 Length:516 Species:Drosophila melanogaster
Sequence 2:NP_445772.1 Gene:Hgfac / 58947 RGDID:70909 Length:653 Species:Rattus norvegicus


Alignment Length:298 Identity:86/298 - (28%)
Similarity:134/298 - (44%) Gaps:49/298 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   240 PPAVVTVPPATPPPQRFDPRSQISSVVCGREGSTTPF----IVRGNEFPRGQYPWLSAVYHKEVR 300
            |..:.|:|.:|          ..:...||:......|    |:.|:....|.:|||:|:|...  
  Rat   375 PEVLATLPEST----------STARPTCGKRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIGN-- 427

  Fly   301 ALAFKCRGSLISSSIVISAAHCVHRM-TEDRVVVGLGRYDLD---DYGEDGAEMRNVMRLLWHPD 361
              .| |.|||:.:..|:|||||.... ..|.:.|.||::..:   |..:..|..:.|...|    
  Rat   428 --GF-CAGSLVHTCWVVSAAHCFSSSPPRDSITVVLGQHFFNRTTDVTQTFAIEKYVPYTL---- 485

  Fly   362 YNTRSYSDADIALITI----ERPVTFNDIIAPICMWTVEASRTVSTTGFIAGWGR-DEDSS---- 417
            |:..:.:|.|:.||.:    ||....:..:.|||:....:|........|||||. ||:.|    
  Rat   486 YSVFNPNDHDLVLIRLKKKGERCAVRSQFVQPICLPEAGSSFPTGHKCQIAGWGHMDENVSGYSN 550

  Fly   418 ---RTQYPRVVEAEIASPTVCASTWRGTMVTERSLCAGNRD-GSGPCVGDSGGGLMVKQGDRWLL 478
               ....|.|.:.:.:||.|     .|..::...||||..| .|..|.|||||.|:.::.....|
  Rat   551 SLLEALVPLVADHKCSSPEV-----YGADISPNMLCAGYFDCKSDACQGDSGGPLVCEKNGVAYL 610

  Fly   479 RGIVSAGERGPAGTCQLNQYVLYCDLSKHINWISENIR 516
            .||:|.|:    |..:||:..:|..:|.:::||::.||
  Rat   611 YGIISWGD----GCGRLNKPGVYTRVSNYVDWINDRIR 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sp212NP_996209.2 GD_N 23..127 CDD:464985
Tryp_SPc 277..514 CDD:238113 77/253 (30%)
HgfacNP_445772.1 FN2 99..145 CDD:128373
EGF_CA 159..194 CDD:238011
FN1 197..237 CDD:238018
EGF 242..274 CDD:394967
Kringle 283..364 CDD:395005
Tryp_SPc 406..641 CDD:238113 77/252 (31%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.