DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Vars and GstD9

Sequence 1:NP_445744.1 Gene:Vars RGDID:3950 Length:1264 Species:Rattus norvegicus
Sequence 2:NP_001287303.1 Gene:GstD9 FlyBaseID:FBgn0038020 Length:218 Species:Drosophila melanogaster

Alignment Length:26 Identity:9/27 (33%)
Similarity:16/27 (59%) Gaps:0/27 (0%)


  Rat  1239 DEVKLQQTEAELRKVDEAIALFQKML 1264
            ::||.......|:|:|:|.|:|..:|
  Fly   119 EDVKKPADPDNLKKIDDAFAMFNTLL 144

Known Domains:


GeneSequenceDomainRegion External IDIdentity
VarsNP_445744.1 GstA <56..203 CDD:223698
GST_C_family 92..213 CDD:295467
PTZ00419 282..1264 CDD:240411 8/25 (32%)
ValRS_core 335..938 CDD:185677
'HIGH' region 344..354
tRNA-synt_1_2 513..640 CDD:290334
'KMSKS' region 862..866
Anticodon_Ia_Val 938..1075 CDD:153416
Val_tRNA-synt_C 1196..1258 CDD:287436 6/19 (32%)
GstD9NP_001287303.1 GST_N_Delta_Epsilon 2..75 CDD:239343
GstA 4..187 CDD:223698 9/27 (33%)
GST_C_Delta_Epsilon 89..207 CDD:198287 9/27 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG0625
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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