DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30480 and bcd

DIOPT Version :10

Sequence 1:NP_725409.1 Gene:CG30480 / 246640 FlyBaseID:FBgn0050480 Length:920 Species:Drosophila melanogaster
Sequence 2:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster


Alignment Length:456 Identity:92/456 - (20%)
Similarity:129/456 - (28%) Gaps:175/456 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 HHH---HHHRHHHHHERQENVEVVATEEVILVENAPKSRKHHHHKQRTSPPPPLPQTSPPFLTP- 104
            :||   |.|.|.|.|....                |.|..|.||:.      |..|..|.|..| 
  Fly    11 YHHPLPHTHTHPHPHSHPH----------------PHSHPHPHHQH------PQLQLPPQFRNPF 53

  Fly   105 -------TEEVGFNVVWEPQAFWNQPSPN--PSTDLDLSQDNEVVDAVETMDTTSASDEFTTVVF 160
                   |..:.:|.: .|......|.|:  ||.:|   .|:.|:.......||..|.:      
  Fly    54 DLLFDERTGAINYNYI-RPYLPNQMPKPDVFPSEEL---PDSLVMRRPRRTRTTFTSSQ------ 108

  Fly   161 QSETKESIRETQKH-------------------------------TRVVEEEIIIDQLDPPPYA- 193
                   |.|.::|                               .|....:|..||.....|. 
  Fly   109 -------IAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQSYEG 166

  Fly   194 -------------PPPLQVQT---GFFPVAQQP---PLSPIAEVVQTDVVAESVEPPLP------ 233
                         ||.||..:   |..|.|..|   |.:|.|.:  |:..:||......      
  Fly   167 MPLSPGMKQSDGDPPSLQTLSLGGGATPNALTPSPTPSTPTAHM--TEHYSESFNAYYNYNGGHN 229

  Fly   234 ------------PTGYIPRINLKPTETIVENVEVI------------------VPAQIQQEPEFI 268
                        |:|..|    .|..|.|...:..                  ||.|:||:.:..
  Fly   230 HAQANRHMHMQYPSGGGP----GPGSTNVNGGQFFQQQQVHNHQQQLHHQGNHVPHQMQQQQQQA 290

  Fly   269 PQPGFVARIVENIEVAAASKSSLVSPQ------KSYYPRTGMVETIVEDIEVVKDDAPVQSGYIP 327
            .|..:.....:..:.:|........|:      .|||.|:||.........|.:..|.      |
  Fly   291 QQQQYHHFDFQQKQASACRVLVKDEPEADYNFNSSYYMRSGMSGATASASAVARGAAS------P 349

  Fly   328 GNVEVESIVENIDADSPFLL-----PPNGFATDESIVENIEVSTDVDDS-------PFLLPVNGF 380
            |:...|.:....| :||.|.     .|...|..|:     |.:.|:||.       ..|.|:.|.
  Fly   350 GSEVYEPLTPKND-ESPSLCGIGIGGPCAIAVGET-----EAADDMDDGTSKKTTLQILEPLKGL 408

  Fly   381 D 381
            |
  Fly   409 D 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30480NP_725409.1 None
bcdNP_788587.1 Homeodomain 106..153 CDD:459649 5/59 (8%)

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