DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG30480 and ind

DIOPT Version :9

Sequence 1:	NP_001260976.1	Gene:	CG30480 / 246640	FlyBaseID:	FBgn0050480	Length:	920	Species:	Drosophila melanogaster
Sequence 2:	NP_996087.2	Gene:	ind / 2768974	FlyBaseID:	FBgn0025776	Length:	320	Species:	Drosophila melanogaster

Alignment Length:	224	Identity:	44/224 - (19%)
Similarity:	74/224 - (33%)	Gaps:	71/224 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly    72 VENAPKSRKHHH-----HKQRTS---------PPPPL-----PQTSPPF--LTPTEEVGFNVVWE 115
            |.::|.|..|.:     .|:::|         |.|||     .|..||.  |..:..||...:.|
  Fly    98 VSSSPGSLYHPYAQLFASKRKSSGFSNYEGCYPSPPLSANPNSQQLPPIHNLYGSPVVGGLPLPE 162

  Fly   116 PQAFWNQPSPNPSTDLDLSQD-------------------------------------NEVVDAV 143
            |.:|...||.:.|..||.:.:                                     |:..|:.
  Fly   163 PGSFCTSPSASSSASLDYTNNFDEPQGKRFKHESSCSPNSSPLKNHSSGGPVEITPLINDYADSS 227

  Fly   144 ETMDTTSASD-------EFTTVVFQS-----ETKESIRETQKHTRVVEEEIIIDQLDPPPYAPPP 196
            :.:.|...|.       ||:...:.|     |....:|.::|..::..:...:.|......: |.
  Fly   228 KRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRVKQKKGGSES-PT 291

  Fly   197 LQVQTGFFPVAQQPPLSPIAEVVQTDVVA 225
            ..:.|......|..|:||..:|.:..|.|
  Fly   292 FNLSTNSNGSPQASPVSPQVKVHELKVEA 320

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG30480	NP_001260976.1	PRK10263	<499..>757	CDD:236669
ind	NP_996087.2	Homeobox	231..283	CDD:278475	8/51 (16%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45460739
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930