DRSC/TRiP Functional Genomics Resources

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Protein Alignment tbrd-3 and Brd4

DIOPT Version :10

Sequence 1:NP_726307.1 Gene:tbrd-3 / 246604 FlyBaseID:FBgn0050417 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_001094373.1 Gene:Brd4 / 362844 RGDID:1307282 Length:1403 Species:Rattus norvegicus


Alignment Length:329 Identity:92/329 - (27%)
Similarity:139/329 - (42%) Gaps:81/329 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QETERSSPEINACKVIIKRLFSSTYKNIAWVFYEPLDPQLLGLHDYHEIVREPMDLSTVRHRLNT 69
            :::.:.|.::..|..|:|.:|:..:...||.||:|:|.:.||||||.:|::.|||:||::.:|.:
  Rat   346 EKSSKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLES 410

  Fly    70 GCYLSAADFAKDIRLIFYNTYLYTNPDHLCYHMAKQLQIIFEEMYSQV------QLYICSS---- 124
            ..|..|.:|..|:||:|.|.|.|..|||....||::||.:||..::::      .:...||    
  Rat   411 REYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPEEPVVTVSSPAVP 475

  Fly   125 -GSKVRAEEESSSDESDSSSPEDEVNG----------SEVSPSIMGA------------------ 160
             .:||.|...||...|||||..|....          :|:...:...                  
  Rat   476 PPTKVVAPPSSSDSSSDSSSDSDSSTDDSEEERAQRLAELQEQLKAVHEQLAALSQPQQNKPKKK 540

  Fly   161 -----------------------------PPSCTPTTECT--------PTPDWT-PPATLETSEQ 187
                                         ||..|.....:        |.|..| ||.|.|:.|:
  Rat   541 EKDKKEKKKEKHKKKEEMEENKKSKAKELPPKKTKKNNSSNSNVSKKEPAPTKTKPPPTYESEEE 605

  Fly   188 Q--EPFTTEEDLDLHAKIQQLDGEVLLHVIHFIQRME-GAEYCN-KELEFDICKLKVHTKRGIRD 248
            .  :|.:.||...|...|.:|.||.|..|:|.||..| ..:..| .|:|.|...||..|.|.:..
  Rat   606 DKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELER 670

  Fly   249 YLAS 252
            |:.|
  Rat   671 YVTS 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbrd-3NP_726307.1 Bromo_Brdt_II_like 13..114 CDD:99930 42/100 (42%)
BET 190..252 CDD:435704 23/63 (37%)
Brd4NP_001094373.1 Bromo_Brdt_I_like 58..164 CDD:99929
Bromo_Brdt_II_like 354..455 CDD:99930 42/100 (42%)
BET 610..674 CDD:435704 23/63 (37%)
PHA03247 <801..1249 CDD:223021
TPH <1268..1311 CDD:464007
BRD4_CDT 1361..1403 CDD:465349
Blue background indicates that the domain is not in the aligned region.

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