DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30062 and RGD1306474

DIOPT Version :10

Sequence 1:NP_725299.2 Gene:CG30062 / 246428 FlyBaseID:FBgn0050062 Length:171 Species:Drosophila melanogaster
Sequence 2:XP_063119867.1 Gene:RGD1306474 / 362881 RGDID:1306474 Length:168 Species:Rattus norvegicus


Alignment Length:150 Identity:50/150 - (33%)
Similarity:76/150 - (50%) Gaps:24/150 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VRVLPLLWFLFHGIPLLAIRLQ-----PCELAGQLYILDV---PKSELPLWLCIAEFESRFNTHV 65
            ::.||.|..|  |:.||:|.:|     .|.||..|....:   ....|..|:|:|:..|.::|..
  Rat     1 MKALPTLLTL--GLLLLSITVQGKVLNRCLLARTLQRFGLGGFKGISLANWICLAKSVSGYDTKA 63

  Fly    66 VGQANADGSRDYGLFQISDRYWC----APPNRTEYYAFNDCNVNCTHLLSDDITMAVQCA-RLIQ 125
            :...:.|.|.:||:||||.||||    .|.::      |.|.|:|..||.::|..:|.|| |:::
  Rat    64 IKYNHEDRSTNYGIFQISSRYWCNDSKTPGSK------NFCRVSCKALLKNNIKASVTCAKRIVK 122

  Fly   126 KQQGWTAWSVY---PEFCNG 142
            ..:|.|.|.|:   .|.|.|
  Rat   123 DPRGITTWYVFIVKEENCAG 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30062NP_725299.2 LYZ_C_invert 29..150 CDD:381618 41/129 (32%)
RGD1306474XP_063119867.1 None

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