DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Hoxc4 and zen2

Sequence 1:NP_001103354.1 Gene:Hoxc4 RGDID:1586210 Length:264 Species:Rattus norvegicus
Sequence 2:NP_476794.1 Gene:zen2 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster

Alignment Length:157 Identity:54/158 (34%)
Similarity:73/158 (46%) Gaps:45/158 (28%)


  Rat   134 IVYPWMK-KIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSE 197
            ::||.:: .:..:......:..:.||||||::..|::|||:|||.|:||.|.|||||:..|.|:|
  Fly    20 MMYPCVELNVEAAPTATTRSSEKSKRSRTAFSSLQLIELEREFHLNKYLARTRRIEISQRLALTE 84

  Rat   198 RQIKIWFQNRRMKWKKDH----------------------------------RLPNTKVRSAPPA 228
            ||:||||||||||.||..                                  |..||.|.:||  
  Fly    85 RQVKIWFQNRRMKLKKSTNRKGAIGALTTSIPLSSQSSEDLQKDDQIVERLLRYANTNVETAP-- 147

  Rat   229 GAAPSTLSAATPGTSEDHSQSATPPEQ 255
                  |.....|..|:  ...|||.|
  Fly   148 ------LRQVDHGVLEE--GQITPPYQ 166

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Hoxc4NP_001103354.1 Homeobox 159..213 CDD:333795 36/54 (67%)
zen2NP_476794.1 Homeobox 46..99 CDD:278475 35/53 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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