DRSC/TRiP Functional Genomics Resources

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Protein Alignment: LRRC6 and CG8800

Sequence 1:XP_006716601.2 Gene:LRRC6 HGNCID:16725 Length:472 Species:Homo sapiens
Sequence 2:NP_610483.1 Gene:CG8800 FlyBaseID:FBgn0033408 Length:188 Species:Drosophila melanogaster

Alignment Length:150 Identity:44/150 (29%)
Similarity:74/150 (49%) Gaps:16/150 (11%)


Human    30 EELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKIENVSKL-KKLEYLNLALNNIEKIENLEGC 93
            |.:|:....||::..: ...:.||:|.|..|.|.:|..:..: :.||.|.|:.|.||||:.|.|.
  Fly    51 ERISMSTNMIEKIFGL-SGMKCLKVLSLSRNYIKQISGLEAVAETLEELWLSYNLIEKIKGLTGL 114

Human    94 EELAKLDLTVNFIGELSSIKNLQHNIHLKELFLMGNPCA-SFDH--YREFVVATLPQLKWLDGKE 155
            :.|..|.::.|.|.:.|....|.....|::|.::|||.: ..|.  :|...:..||.::.|||:.
  Fly   115 KCLKVLYISNNLIKDWSEFNRLAEIESLEDLVVVGNPLSEGLDEPTWRAECIKRLPTIRKLDGEP 179

Human   156 IEPSERIKALQDYSVIEPQI 175
            :..:|           |||:
  Fly   180 VVLNE-----------EPQL 188

Known Domains:


GeneSequenceDomainRegion External IDIdentity
LRRC6XP_006716601.2 LRR_RI <5..200 CDD:238064 44/150 (29%)
leucine-rich repeat 29..51 CDD:275378 4/21 (19%)
LRR_8 52..104 CDD:290566 20/53 (38%)
LRR_4 52..92 CDD:289563 17/41 (41%)
leucine-rich repeat 52..73 CDD:275378 7/22 (32%)
leucine-rich repeat 74..95 CDD:275378 11/21 (52%)
leucine-rich repeat 96..120 CDD:275378 6/24 (25%)
LRRcap 134..152 CDD:197729 5/20 (25%)
CG8800NP_610483.1 LRR_9 14..184 CDD:317038 40/134 (30%)
leucine-rich repeat 50..71 CDD:275380 4/21 (19%)
leucine-rich repeat 95..116 CDD:275380 11/21 (52%)
leucine-rich repeat 117..141 CDD:275380 6/24 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E2759_KOG0531
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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