DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxd1 and zen2

DIOPT Version :10

Sequence 1:NP_034597.2 Gene:Hoxd1 / 15429 MGIID:96201 Length:328 Species:Mus musculus
Sequence 2:NP_476794.1 Gene:zen2 / 40827 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster


Alignment Length:123 Identity:52/123 - (42%)
Similarity:65/123 - (52%) Gaps:28/123 - (22%)


- Green bases have known domain annotations that are detailed below.


Mouse   192 ASPTSSLPAAHSTFEWMKVKRNAPKKSKLSEYGATSPPSAIRTNFSTKQLTELEKEFHFNKYLTR 256
            |:||::              ..:.:|||.|           ||.||:.||.|||:|||.||||.|
  Fly    31 AAPTAT--------------TRSSEKSKRS-----------RTAFSSLQLIELEREFHLNKYLAR 70

Mouse   257 ARRIEIANCLQLNDTQVKIWFQNRRMKQKK-REREGLLATAASVASIKLPRSETSPIK 313
            .|||||:..|.|.:.||||||||||||.|| ..|:|  |..|...||.|....:..::
  Fly    71 TRRIEISQRLALTERQVKIWFQNRRMKLKKSTNRKG--AIGALTTSIPLSSQSSEDLQ 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxd1NP_034597.2 PRK12323 <11..217 CDD:481241 3/24 (13%)
Antp-type hexapeptide 204..209 0/4 (0%)
Homeodomain 233..286 CDD:459649 36/52 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 304..328 1/10 (10%)
zen2NP_476794.1 Homeodomain 44..100 CDD:459649 38/66 (58%)

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