DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Hoxc4 and Antp

Sequence 1:NP_038581.2 Gene:Hoxc4 MGIID:96195 Length:264 Species:Mus musculus
Sequence 2:NP_996167.1 Gene:Antp FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster

Alignment Length:240 Identity:86/241 (36%)
Similarity:104/241 (43%) Gaps:81/241 (34%)


Mouse    12 YIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPG 76
            |.|...|...|..||                    ||:..:|          ::|.....:..|.
  Fly   210 YTDVGVPDVTEVHQN--------------------HHNMGMY----------QQQSGVPPVGAPP 244

Mouse    77 NSRAH---GPAQAGHHHPEKSQPLCEPA--PLSGTSASPSPAPPACSQPAPDHPSSAASKQPIVY 136
            ....|   ||.|....||.:..|   |:  |.|.:|..|||                      :|
  Fly   245 QGMMHQGQGPPQMHQGHPGQHTP---PSQNPNSQSSGMPSP----------------------LY 284

Mouse   137 PWMKKIHVSTVNPNYNGG---EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSER 198
            |||:.          ..|   |.||.|..|||.|.||||||||:||||||||||||||:|||:||
  Fly   285 PWMRS----------QFGKCQERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTER 339

Mouse   199 QIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS 243
            |||||||||||||||::     |.:..|.:|.....:   ||..|
  Fly   340 QIKIWFQNRRMKWKKEN-----KTKGEPGSGGEGDEI---TPPNS 376

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Hoxc4NP_038581.2 Antp-type hexapeptide 135..140 4/5 (80%)
Homeobox 159..212 CDD:278475 45/53 (85%)
AntpNP_996167.1 Homeobox 301..353 CDD:278475 45/52 (87%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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