DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gria1 and Ir7e

DIOPT Version :10

Sequence 1:NP_032191.2 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus
Sequence 2:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster


Alignment Length:208 Identity:36/208 - (17%)
Similarity:70/208 - (33%) Gaps:42/208 - (20%)


- Green bases have known domain annotations that are detailed below.


Mouse    19 LVLNKITDAQQTHESLKNATTAP-PLNATGNHTANNASNASSNSVYSNNTTTQSSSTTQMTPTV- 81
            :||.::......||.|:..:..| .:..|..|.||.:.:..:.:..:.|.:....|..:..... 
  Fly    11 VVLRRLPKYMTEHEVLEQISPLPEEVIGTYFHPANFSFDRCAYATLTVNFSEYCDSMMEFERRFD 75

Mouse    82 ------STNNTSGTTLSNLTVTASAEHPTTTENDKVTSSTTTTTNLTAVAFTNSTEKATLLSTKP 140
                  |..|.|...:.    .||.::....:.:::...|.....|        |:|..|...|.
  Fly    76 GYIFVDSRGNDSAAVVE----AASNQNFAKCDRNRMKEDTRVGAIL--------TDKYYLDFCKK 128

Mouse   141 VTETTAI-TYTVPNSTHSV---IDSQAGLNRSEQSLTIFFSVLLGLIVLVTLVHFVYKFSRSKER 201
            :.|..|| ..|:......:   .|::..:::.|..|..:|                  |.:...:
  Fly   129 LEEERAIPILTLEQQIRKLNQPDDARTQIDKMETPLVKYF------------------FEKETGK 175

Mouse   202 SIQYTHRRLQNDD 214
            ...|..||.:.|:
  Fly   176 RRDYDARRQRRDE 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gria1NP_032191.2 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613 34/201 (17%)
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 857..881
PDZ-binding 904..907
Ir7eNP_001138176.1 Periplasmic_Binding_Protein_Type_2 218..>313 CDD:473866
Blue background indicates that the domain is not in the aligned region.

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