DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gria1 and Ir85a

DIOPT Version :10

Sequence 1:NP_032191.2 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus
Sequence 2:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster


Alignment Length:378 Identity:67/378 - (17%)
Similarity:126/378 - (33%) Gaps:104/378 - (27%)


- Green bases have known domain annotations that are detailed below.


Mouse   487 DVA-----VAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFA 546
            |||     :.|.|.....|..:..::.    .:.:::.| .|:.|..::........:|..|:.:
  Fly   272 DVAMNIRFLVPDTFRKQAESTVSHTRD----DLCVIVPK-AKTAPTFWNIFRSFGSLVWALILVS 331

Mouse   547 YIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLS 611
            .:..:|..:::                        .:|.|......|: ||.......|.|.. |
  Fly   332 VLVANVFCYIL------------------------KSEVGRVPMQLFA-GALTMPMTQIPPNH-S 370

Mouse   612 GRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAK--------------------- 655
            .|:....|.:|.|:|.|::..||.:.:..:..:..|.....||:                     
  Fly   371 IRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALARSHYHIIIRPRHVKHIQHFLTL 435

Mouse   656 ----QTEIAYGTLEAGSTK--EFFRRSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIRVRKSKGKY 714
                ::.|....||...|:  |..|.:.|     .:.|::....:.|...:     ||....|:.
  Fly   436 GHKHESRIREQMLEVSDTQMYEMMRNNDI-----RFAYLEKYHIARFQVNS-----RVHMHLGRP 490

Mouse   715 AYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQGL---LDKL 776
            .:.|   ||..:   .|...:.:            .|.||.....::..:...:|.|.   .|::
  Fly   491 LFHL---MNSCL---VPFHAVYI------------VPYGSPYLGFLDSLIRSSHEFGFERYWDRI 537

Mouse   777 KNKWWYDKG------ECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLV 823
            .|..:...|      ..|||    .|:...|.|.:...||.:.:.|:|:|.:|
  Fly   538 MNSAFIKSGVKVVNRRRGSG----NDEPVVLKLQHFHAVFALWLVGIGMACIV 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gria1NP_032191.2 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 55/340 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 857..881
PDZ-binding 904..907
Ir85aNP_649833.1 None
Blue background indicates that the domain is not in the aligned region.

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