DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gria1 and Ir75d

DIOPT Version :10

Sequence 1:NP_032191.2 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus
Sequence 2:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster


Alignment Length:415 Identity:96/415 - (23%)
Similarity:178/415 - (42%) Gaps:54/415 - (13%)


- Green bases have known domain annotations that are detailed below.


Mouse   442 LAAEIAKHVGYSYR-LEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDF 505
            |..|:|..:..||. .:.|:   ||.|.|: .:::|::|.......|:|...:.:.|.|..::||
  Fly   296 LMLELANRLNMSYNTYQTVN---YGWRQPN-GSFDGLMGRFQRYELDLAQLAIFMRLDRIALVDF 356

Mouse   506 SKPFMSLGISIMIKKPQKSK-PGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEE 569
            ......:...||.::|..|. ..:|:.  |...::|:.|:...|..:|||.|...|||:      
  Fly   357 VAETYRVRAGIMFRQPPLSAVANIFAM--PFENDVWVSILMLLIITTVVLVLELFFSPH------ 413

Mouse   570 FEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANL 634
                        :::....::|.|..||..|||..:..|:.|.||:....:...|.:.:|::||:
  Fly   414 ------------NHDMSYMDTLNFVWGAMCQQGFYVEVRNRSARIIVFTTFVAALFLFTSFSANI 466

Mouse   635 AAFLTVERMVSP---IESAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMW-TYMKSAEPSV 695
            .|.|.     ||   |:|..||. |:.:..|..:....|.:|..|...|.:.:: ..:.|...::
  Fly   467 VALLQ-----SPSDAIQSLSDLG-QSPLEIGVQDTQYNKIYFTESTDPVTKNLYHKKIASKGENI 525

Mouse   696 FVRTTEEGMIRVRKSKGKYAYLLE-----STMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSA 755
            ::|.. .||.::|  .|.:||.:|     ..:::...:.:.|..|:: .........|.|.|...
  Fly   526 YMRPL-LGMEKMR--TGLFAYQVELQAGYQIVSDTFSEPEKCGLMEL-EPFQLPMLAIPTRKNFP 586

Mouse   756 LRNPVNLAVLKLNEQGLLDKLKNKWWYDKGEC--GSGGGDSKDKTSALSLSNVAGVFYILIGGLG 818
            .:..:...:....|..|:::.:.||...|.:|  |.||..|...|.......:.|.      |..
  Fly   587 YKELIRRQLRWQREVSLVNREERKWIPQKPKCEGGVGGFVSIGITECRYALGIFGC------GAA 645

Mouse   819 LAMLVALIEFCYKSRSESKR-MKGF 842
            ::.::.|.||.::...:..| :||:
  Fly   646 VSFVLFLFEFIFRHFKQVYRIIKGY 670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gria1NP_032191.2 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 82/355 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 857..881
PDZ-binding 904..907
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>372 CDD:473866 19/76 (25%)
Lig_chan 386..643 CDD:459656 65/290 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.