Sequence 1: | NP_001106796.1 | Gene: | Gria1 / 14799 | MGIID: | 95808 | Length: | 907 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_647962.1 | Gene: | Ir64a / 38616 | FlyBaseID: | FBgn0035604 | Length: | 859 | Species: | Drosophila melanogaster |
Alignment Length: | 645 | Identity: | 116/645 - (17%) |
---|---|---|---|
Similarity: | 215/645 - (33%) | Gaps: | 206/645 - (31%) |
- Green bases have known domain annotations that are detailed below.
Mouse 326 NPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVP 390
Mouse 391 AATDAQAGGDNSSVQNRT-----YIVTTILEDPYVMLKKNANQFEG-NDRYEGYCVELAAEIAKH 449
Mouse 450 VGYSYRLEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGI 514
Mouse 515 SIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVV-LFLVSRFSPYEWH------------ 566
Mouse 567 --------------------------------------SEEFEEGRDQTTSD----------QSN 583
Mouse 584 EF---------------GIF-NSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTA 632
Mouse 633 NLAAFLTVERMVSPIESAEDLAKQTEIAYGTLEAGS-----TKEFFRRSKIAVFEKMWTYMK--- 689
Mouse 690 ---------------------SAEPSVFVR---------------------TTEEGMIRVRKSKG 712
Mouse 713 KYAYLLE-----STMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRGPVNLAVLKLSEQGV 772
Mouse 773 LDKLKSKWWYDKGECGSKDSGSKDKTSAL--SLSNVAGVFYILIGGLGLAMLVALIEFCY 830 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Gria1 | NP_001106796.1 | PBP1_iGluR_AMPA_GluR1 | 26..389 | CDD:107385 | 11/62 (18%) |
ANF_receptor | 37..372 | CDD:279440 | 8/45 (18%) | ||
PBP2_iGluR_AMPA_GluR1 | 406..787 | CDD:270447 | 94/518 (18%) | ||
Glutamate binding. /evidence=ECO:0000250 | 492..494 | 1/1 (100%) | |||
Lig_chan | 538..817 | CDD:278489 | 74/412 (18%) | ||
Glutamate binding. /evidence=ECO:0000250 | 668..669 | 0/5 (0%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 857..881 | ||||
PDZ-binding | 904..907 | ||||
Ir64a | NP_647962.1 | Periplasmic_Binding_Protein_Type_2 | 351..>465 | CDD:304360 | 27/136 (20%) |
Lig_chan | 563..828 | CDD:278489 | 57/283 (20%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C167846476 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1052 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18966 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.840 |