DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gria1 and Ir64a

DIOPT Version :10

Sequence 1:NP_032191.2 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus
Sequence 2:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster


Alignment Length:502 Identity:95/502 - (18%)
Similarity:167/502 - (33%) Gaps:165/502 - (32%)


- Green bases have known domain annotations that are detailed below.


Mouse   471 TKAW--------NGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPG 527
            |.:|        :||:|.|:....|:..||:...|.|.:.||.:....|.....:.:.|:.::..
  Fly   366 TTSWGYVKNGRFDGMIGALIRNETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFIFRHPRSTQKD 430

Mouse   528 VFSFLDPLAYEIWMCIVFAYIGVSVV-LFLVSRFSPYEWH------------------------- 566
            ...||.|...::|:.||    |..|: :|::...:..||.                         
  Fly   431 RIVFLQPFTNDVWILIV----GCGVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPRHHYQQQ 491

Mouse   567 -------------------------SEEFEEGRDQTTSD----------QSNEF----------- 585
                                     .|:.||..|.|..|          :.|::           
  Fly   492 QQQEQVEAPVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQKKA 556

Mouse   586 ----GIF-NSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVS 645
                |:| .|:.|.:|...|||...|...:|||.:......|:..|...|:|::...|.:|: ..
  Fly   557 PERVGLFLESVLFFVGIICQQGLGFSTSFVSGRCIVITSLLFSFCIYQFYSASIVGTLLMEK-PK 620

Mouse   646 PIESAEDLAKQTEIAYGTLEAGS-----TKEFFRRSKIAVFEKMWTYMK---------------- 689
            .|::..||      .:.:|:.|.     .:::|..:|..|  .|..|.|                
  Fly   621 TIKTLSDL------VHSSLKVGMEDILYNRDYFLHTKDPV--SMELYAKKITSVPTTKENEADED 677

Mouse   690 --------SAEPSVFVR---------------------TTEEGMIRVRKSKGKYAYLLE-----S 720
                    |.:|:...|                     ..|.|::|   ..| :|:.::     .
  Fly   678 EPVDPNPVSTDPAKSYRDIVHSHETGAHAKDNAASNWLDPETGLLR---HLG-FAFHVDVAAAYK 738

Mouse   721 TMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQGLLDKLKNKWWYDKG 785
            .:.|...::..||..:|......|...| ..|.|.:|..::..:.::.|.|:|....|.|...|.
  Fly   739 IIAETFSEQDICDLTEVSMFPPQKTVSI-MQKNSPMRKVISYGLRRVTETGILTYHFNVWHSRKP 802

Mouse   786 ECGSGGGDSKDKTSAL--SLSNVAGVFYILIGGLGLAMLVALIEFCY 830
            .|     ..|.:||.|  .:..|:....||:....:.:::...|..|
  Fly   803 PC-----VKKIETSDLHVDMDTVSSALLILLFSYAITLMILGTEILY 844

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gria1NP_032191.2 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 85/455 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 857..881
PDZ-binding 904..907
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:473866 24/102 (24%)
Lig_chan 563..828 CDD:459656 58/283 (20%)
Blue background indicates that the domain is not in the aligned region.

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